Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RB2 entry

There are 2 chains in PDB entry 8RB2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	ILE 930
B	SER 227	ILE 628

There are160 helices in PDB entry 8RB2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	82	95	Right-handed alpha
Helix 4	AA4	A	128	130	Right-handed 310
Helix 5	AA5	A	131	136	Right-handed alpha
Helix 6	AA6	A	184	195	Right-handed alpha
Helix 7	AA7	A	209	220	Right-handed alpha
Helix 8	AA8	A	228	233	Right-handed 310
Helix 9	AA9	A	236	245	Right-handed alpha
Helix 10	AB1	A	254	263	Right-handed 310
Helix 11	AB2	A	265	278	Right-handed alpha
Helix 12	AB3	A	279	286	Right-handed 310
Helix 13	AB4	A	295	299	Right-handed 310
Helix 14	AB5	A	303	310	Right-handed alpha
Helix 15	AB6	A	325	331	Right-handed alpha
Helix 16	AB7	A	335	348	Right-handed alpha
Helix 17	AB8	A	352	369	Right-handed alpha
Helix 18	AB9	A	369	379	Right-handed alpha
Helix 19	AC1	A	380	384	Right-handed 310
Helix 20	AC2	A	386	397	Right-handed alpha
Helix 21	AC3	A	400	412	Right-handed alpha
Helix 22	AC4	A	413	423	Right-handed alpha
Helix 23	AC5	A	428	436	Right-handed alpha
Helix 24	AC6	A	436	447	Right-handed alpha
Helix 25	AC7	A	447	458	Right-handed alpha
Helix 26	AC8	A	461	466	Right-handed 310
Helix 27	AC9	A	475	504	Right-handed alpha
Helix 28	AD1	A	528	534	Right-handed 310
Helix 29	AD2	A	553	586	Right-handed alpha
Helix 30	AD3	A	588	614	Right-handed alpha
Helix 31	AD4	A	674	691	Right-handed alpha
Helix 32	AD5	A	723	739	Right-handed alpha
Helix 33	AD6	A	755	774	Right-handed alpha
Helix 34	AD7	A	784	793	Right-handed 310
Helix 35	AD8	A	826	834	Right-handed alpha
Helix 36	AD9	A	837	851	Right-handed alpha
Helix 37	AE1	A	852	856	Right-handed 310
Helix 38	AE2	A	871	893	Right-handed alpha
Helix 39	AE3	A	895	899	Right-handed 310
Helix 40	AE4	A	900	919	Right-handed alpha
Helix 41	AE5	A	920	930	Right-handed alpha
Helix 42	AE6	B	230	242	Right-handed alpha
Helix 43	AE7	B	260	271	Right-handed alpha
Helix 44	AE8	B	289	300	Right-handed alpha
Helix 45	AE9	B	312	317	Right-handed alpha
Helix 46	AF1	B	411	422	Right-handed alpha
Helix 47	AF2	B	433	445	Right-handed alpha
Helix 48	AF3	B	448	452	Right-handed 310
Helix 49	AF4	B	459	463	Right-handed 310
Helix 50	AF5	B	464	478	Right-handed alpha
Helix 51	AF6	B	487	494	Right-handed alpha
Helix 52	AF7	B	496	512	Right-handed alpha
Helix 53	AF8	B	513	514	Right-handed 310
Helix 54	AF9	B	515	520	Right-handed 310
Helix 55	AG1	B	521	525	Right-handed 310
Helix 56	AG2	B	538	546	Right-handed alpha
Helix 57	AG3	B	559	565	Right-handed alpha
Helix 58	AG4	B	569	582	Right-handed alpha
Helix 59	AG5	B	586	603	Right-handed alpha
Helix 60	AG6	B	606	616	Right-handed alpha
Helix 61	AG7	B	620	630	Right-handed alpha
Helix 62	AG8	B	634	663	Right-handed alpha
Helix 63	AG9	B	665	679	Right-handed alpha
Helix 64	AH1	B	681	688	Right-handed alpha
Helix 65	AH2	B	690	697	Right-handed alpha
Helix 66	AH3	B	698	702	Right-handed 310
Helix 67	AH4	B	709	738	Right-handed alpha
Helix 68	AH5	B	759	764	Right-handed 310
Helix 69	AH6	B	782	816	Right-handed alpha
Helix 70	AH7	B	817	844	Right-handed alpha
Helix 71	AH8	B	864	871	Right-handed alpha
Helix 72	AH9	B	901	919	Right-handed alpha
Helix 73	AI1	B	951	966	Right-handed alpha
Helix 74	AI2	B	982	1000	Right-handed alpha
Helix 75	AI3	B	1011	1016	Right-handed alpha
Helix 76	AI4	B	1016	1021	Right-handed alpha
Helix 77	AI5	B	1067	1076	Right-handed alpha
Helix 78	AI6	B	1079	1111	Right-handed alpha
Helix 79	AI7	B	1115	1126	Right-handed alpha
Helix 80	AI8	E	13	25	Right-handed alpha
Helix 81	AI9	E	47	57	Right-handed alpha
Helix 82	AJ1	E	82	95	Right-handed alpha
Helix 83	AJ2	E	128	130	Right-handed 310
Helix 84	AJ3	E	131	136	Right-handed alpha
Helix 85	AJ4	E	184	195	Right-handed alpha
Helix 86	AJ5	E	208	221	Right-handed alpha
Helix 87	AJ6	E	228	233	Right-handed 310
Helix 88	AJ7	E	236	245	Right-handed alpha
Helix 89	AJ8	E	254	262	Right-handed 310
Helix 90	AJ9	E	263	278	Right-handed alpha
Helix 91	AK1	E	279	286	Right-handed 310
Helix 92	AK2	E	295	299	Right-handed 310
Helix 93	AK3	E	303	310	Right-handed alpha
Helix 94	AK4	E	325	331	Right-handed alpha
Helix 95	AK5	E	335	348	Right-handed alpha
Helix 96	AK6	E	352	369	Right-handed alpha
Helix 97	AK7	E	369	379	Right-handed alpha
Helix 98	AK8	E	380	384	Right-handed 310
Helix 99	AK9	E	386	396	Right-handed alpha
Helix 100	AL1	E	400	412	Right-handed alpha
Helix 101	AL2	E	413	424	Right-handed alpha
Helix 102	AL3	E	428	436	Right-handed alpha
Helix 103	AL4	E	436	447	Right-handed alpha
Helix 104	AL5	E	447	458	Right-handed alpha
Helix 105	AL6	E	461	466	Right-handed 310
Helix 106	AL7	E	471	474	Right-handed 310
Helix 107	AL8	E	475	504	Right-handed alpha
Helix 108	AL9	E	528	534	Right-handed 310
Helix 109	AM1	E	553	586	Right-handed alpha
Helix 110	AM2	E	588	614	Right-handed alpha
Helix 111	AM3	E	674	691	Right-handed alpha
Helix 112	AM4	E	723	739	Right-handed alpha
Helix 113	AM5	E	755	773	Right-handed alpha
Helix 114	AM6	E	784	793	Right-handed 310
Helix 115	AM7	E	826	834	Right-handed alpha
Helix 116	AM8	E	837	851	Right-handed alpha
Helix 117	AM9	E	852	857	Right-handed 310
Helix 118	AN1	E	868	894	Right-handed alpha
Helix 119	AN2	E	895	899	Right-handed 310
Helix 120	AN3	E	900	919	Right-handed alpha
Helix 121	AN4	E	920	930	Right-handed alpha
Helix 122	AN5	F	230	242	Right-handed alpha
Helix 123	AN6	F	260	271	Right-handed alpha
Helix 124	AN7	F	289	299	Right-handed alpha
Helix 125	AN8	F	312	317	Right-handed alpha
Helix 126	AN9	F	411	422	Right-handed alpha
Helix 127	AO1	F	433	446	Right-handed alpha
Helix 128	AO2	F	459	463	Right-handed 310
Helix 129	AO3	F	464	478	Right-handed alpha
Helix 130	AO4	F	490	494	Right-handed alpha
Helix 131	AO5	F	496	512	Right-handed alpha
Helix 132	AO6	F	513	514	Right-handed 310
Helix 133	AO7	F	515	520	Right-handed 310
Helix 134	AO8	F	521	525	Right-handed 310
Helix 135	AO9	F	538	546	Right-handed alpha
Helix 136	AP1	F	559	565	Right-handed alpha
Helix 137	AP2	F	569	582	Right-handed alpha
Helix 138	AP3	F	586	603	Right-handed alpha
Helix 139	AP4	F	606	616	Right-handed alpha
Helix 140	AP5	F	620	630	Right-handed alpha
Helix 141	AP6	F	634	655	Right-handed alpha
Helix 142	AP7	F	655	663	Right-handed alpha
Helix 143	AP8	F	665	679	Right-handed alpha
Helix 144	AP9	F	681	688	Right-handed alpha
Helix 145	AQ1	F	690	697	Right-handed alpha
Helix 146	AQ2	F	698	702	Right-handed 310
Helix 147	AQ3	F	711	729	Right-handed alpha
Helix 148	AQ4	F	729	738	Right-handed alpha
Helix 149	AQ5	F	759	764	Right-handed 310
Helix 150	AQ6	F	782	816	Right-handed alpha
Helix 151	AQ7	F	817	844	Right-handed alpha
Helix 152	AQ8	F	864	871	Right-handed alpha
Helix 153	AQ9	F	901	919	Right-handed alpha
Helix 154	AR1	F	951	966	Right-handed alpha
Helix 155	AR2	F	982	1000	Right-handed alpha
Helix 156	AR3	F	1011	1016	Right-handed alpha
Helix 157	AR4	F	1016	1021	Right-handed alpha
Helix 158	AR5	F	1067	1076	Right-handed alpha
Helix 159	AR6	F	1079	1111	Right-handed alpha
Helix 160	AR7	F	1115	1124	Right-handed alpha

There are 23 sheets in PDB entry 8RB2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	75	81	anti-parallel
Strand 3	A	42	46	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	99	105	parallel
Strand 6	A	117	123	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	198	202	parallel
Strand 3	A	147	155	parallel
Strand 4	A	158	167	anti-parallel
Strand 5	A	172	179	anti-parallel
Strand 6	A	290	293	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	707	711	parallel
Strand 3	A	744	748	parallel
Strand 4	A	777	781	parallel
Strand 5	A	664	668	parallel
Strand 6	A	797	801	parallel
Strand 7	A	818	819	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	516	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	548	552	anti-parallel
Strand 4	A	540	544	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	699	703	parallel
Strand 3	A	631	637	anti-parallel
Strand 4	A	653	658	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	807	first strand
Strand 2	A	810	813	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	280	286	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	246	252	anti-parallel
Strand 5	B	303	309	parallel
Strand 6	B	328	334	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	355	356	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	458	first strand
Strand 2	B	425	429	parallel
Strand 3	B	368	374	parallel
Strand 4	B	386	393	anti-parallel
Strand 5	B	400	407	anti-parallel
Strand 6	B	526	527	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	747	first strand
Strand 2	B	750	757	anti-parallel
Strand 3	B	777	781	anti-parallel
Strand 4	B	769	773	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	926	930	parallel
Strand 3	B	856	862	anti-parallel
Strand 4	B	880	884	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	938	first strand
Strand 2	B	971	974	parallel
Strand 3	B	1004	1008	parallel
Strand 4	B	891	895	parallel
Strand 5	B	1025	1032	parallel
Strand 6	B	1055	1061	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	75	81	anti-parallel
Strand 3	E	42	46	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	99	105	parallel
Strand 6	E	117	123	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	227	first strand
Strand 2	E	198	202	parallel
Strand 3	E	147	153	parallel
Strand 4	E	160	167	anti-parallel
Strand 5	E	172	179	anti-parallel
Strand 6	E	290	293	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	302	first strand
Strand 2	E	707	711	parallel
Strand 3	E	744	748	parallel
Strand 4	E	777	781	parallel
Strand 5	E	664	668	parallel
Strand 6	E	797	801	parallel
Strand 7	E	818	819	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	511	516	first strand
Strand 2	E	520	526	anti-parallel
Strand 3	E	548	552	anti-parallel
Strand 4	E	540	544	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	623	625	first strand
Strand 2	E	699	703	parallel
Strand 3	E	631	637	anti-parallel
Strand 4	E	653	658	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	804	806	first strand
Strand 2	E	811	813	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	275	277	first strand
Strand 2	F	280	286	anti-parallel
Strand 3	F	255	259	anti-parallel
Strand 4	F	246	252	anti-parallel
Strand 5	F	303	309	parallel
Strand 6	F	328	334	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	454	458	first strand
Strand 2	F	425	429	parallel
Strand 3	F	368	374	parallel
Strand 4	F	386	393	anti-parallel
Strand 5	F	400	407	anti-parallel
Strand 6	F	526	527	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	745	747	first strand
Strand 2	F	750	757	anti-parallel
Strand 3	F	777	781	anti-parallel
Strand 4	F	769	773	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	850	852	first strand
Strand 2	F	926	930	parallel
Strand 3	F	856	862	anti-parallel
Strand 4	F	880	885	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	935	938	first strand
Strand 2	F	971	974	parallel
Strand 3	F	1004	1008	parallel
Strand 4	F	891	895	parallel
Strand 5	F	1025	1030	parallel
Strand 6	F	1059	1061	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RB2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB2