Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RB9 entry

There are 7 chains in PDB entry 8RB9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	ILE 190
C	PHE 3	LYS 478
D	SER 5	ALA 353
E	VAL 16	GLN 228
G	PRO 34	ALA 228
H	ARG 2	GLN 72
B	ILE 2	ALA 174

There are 63 helices in PDB entry 8RB9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	23	31	Right-handed alpha
Helix 3	AA3	A	33	62	Right-handed alpha
Helix 4	AA4	A	62	67	Right-handed alpha
Helix 5	AA5	A	71	90	Right-handed alpha
Helix 6	AA6	A	105	110	Right-handed 310
Helix 7	AA7	A	113	126	Right-handed alpha
Helix 8	AA8	A	128	158	Right-handed alpha
Helix 9	AA9	A	168	184	Right-handed alpha
Helix 10	AB1	A	185	187	Right-handed 310
Helix 11	AB2	C	124	134	Right-handed alpha
Helix 12	AB3	C	146	157	Right-handed alpha
Helix 13	AB4	C	174	183	Right-handed alpha
Helix 14	AB5	C	183	198	Right-handed alpha
Helix 15	AB6	C	211	222	Right-handed alpha
Helix 16	AB7	C	236	240	Right-handed 310
Helix 17	AB8	C	241	250	Right-handed alpha
Helix 18	AB9	C	259	263	Right-handed 310
Helix 19	AC1	C	270	283	Right-handed alpha
Helix 20	AC2	C	311	319	Right-handed alpha
Helix 21	AC3	C	385	395	Right-handed alpha
Helix 22	AC4	C	397	404	Right-handed alpha
Helix 23	AC5	C	415	419	Right-handed 310
Helix 24	AC6	C	424	478	Right-handed alpha
Helix 25	AC7	D	17	41	Right-handed alpha
Helix 26	AC8	D	41	67	Right-handed alpha
Helix 27	AC9	D	69	75	Right-handed 310
Helix 28	AD1	D	76	89	Right-handed alpha
Helix 29	AD2	D	94	106	Right-handed alpha
Helix 30	AD3	D	110	114	Right-handed 310
Helix 31	AD4	D	122	135	Right-handed alpha
Helix 32	AD5	D	155	164	Right-handed alpha
Helix 33	AD6	D	178	188	Right-handed alpha
Helix 34	AD7	D	191	198	Right-handed alpha
Helix 35	AD8	D	201	208	Right-handed alpha
Helix 36	AD9	D	220	232	Right-handed alpha
Helix 37	AE1	D	237	258	Right-handed alpha
Helix 38	AE2	D	265	270	Right-handed alpha
Helix 39	AE3	D	273	281	Right-handed alpha
Helix 40	AE4	D	292	312	Right-handed alpha
Helix 41	AE5	D	318	337	Right-handed alpha
Helix 42	AE6	E	17	27	Right-handed alpha
Helix 43	AE7	E	37	44	Right-handed alpha
Helix 44	AE8	E	47	72	Right-handed alpha
Helix 45	AE9	E	73	76	Right-handed 310
Helix 46	AF1	E	80	104	Right-handed alpha
Helix 47	AF2	E	104	112	Right-handed alpha
Helix 48	AF3	E	121	131	Right-handed alpha
Helix 49	AF4	E	136	168	Right-handed alpha
Helix 50	AF5	E	173	179	Right-handed alpha
Helix 51	AF6	E	180	186	Right-handed 310
Helix 52	AF7	E	202	228	Right-handed alpha
Helix 53	AF8	G	35	79	Right-handed alpha
Helix 54	AF9	G	82	86	Right-handed 310
Helix 55	AG1	G	89	93	Right-handed 310
Helix 56	AG2	G	168	172	Right-handed 310
Helix 57	AG3	G	202	222	Right-handed alpha
Helix 58	AG4	H	25	34	Right-handed alpha
Helix 59	AG5	H	34	39	Right-handed alpha
Helix 60	AG6	B	3	26	Right-handed alpha
Helix 61	AG7	B	77	85	Right-handed alpha
Helix 62	AG8	B	113	118	Right-handed alpha
Helix 63	AG9	B	162	166	Right-handed 310

There are 11 sheets in PDB entry 8RB9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	302	307	parallel
Strand 3	C	288	293	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	97	105	anti-parallel
Strand 3	C	80	84	anti-parallel
Strand 4	C	56	57	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	97	105	anti-parallel
Strand 3	C	87	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	62	65	anti-parallel
Strand 3	C	74	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	165	first strand
Strand 2	C	265	269	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	231	233	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	187	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	111	first strand
Strand 2	G	116	126	anti-parallel
Strand 3	G	131	139	anti-parallel
Strand 4	G	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	14	18	first strand
Strand 2	H	3	7	anti-parallel
Strand 3	H	67	71	parallel
Strand 4	H	48	51	anti-parallel
Strand 5	H	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	157	158	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RB9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RB9