Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RBF entry

There are 4 chains in PDB entry 8RBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	ARG 767
B	ASP 2	PHE 376
C	THR 5	PHE 375
D	THR 5	PHE 375

There are 84 helices in PDB entry 8RBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	77	Right-handed 310
Helix 2	AA2	A	81	95	Right-handed alpha
Helix 3	AA3	A	120	128	Right-handed alpha
Helix 4	AA4	A	138	154	Right-handed alpha
Helix 5	AA5	A	168	183	Right-handed alpha
Helix 6	AA6	A	191	207	Right-handed alpha
Helix 7	AA7	A	246	250	Right-handed 310
Helix 8	AA8	A	259	269	Right-handed alpha
Helix 9	AA9	A	271	277	Right-handed alpha
Helix 10	AB1	A	285	290	Right-handed alpha
Helix 11	AB2	A	300	316	Right-handed alpha
Helix 12	AB3	A	318	338	Right-handed alpha
Helix 13	AB4	A	354	365	Right-handed alpha
Helix 14	AB5	A	367	376	Right-handed alpha
Helix 15	AB6	A	392	424	Right-handed alpha
Helix 16	AB7	A	448	480	Right-handed alpha
Helix 17	AB8	A	483	487	Right-handed 310
Helix 18	AB9	A	492	501	Right-handed alpha
Helix 19	AC1	A	504	515	Right-handed alpha
Helix 20	AC2	A	519	532	Right-handed alpha
Helix 21	AC3	A	563	569	Right-handed alpha
Helix 22	AC4	A	573	582	Right-handed alpha
Helix 23	AC5	A	587	592	Right-handed alpha
Helix 24	AC6	A	627	631	Right-handed alpha
Helix 25	AC7	A	634	653	Right-handed alpha
Helix 26	AC8	A	673	684	Right-handed alpha
Helix 27	AC9	A	685	696	Right-handed alpha
Helix 28	AD1	A	703	711	Right-handed alpha
Helix 29	AD2	A	722	735	Right-handed alpha
Helix 30	AD3	A	737	739	Right-handed 310
Helix 31	AD4	A	753	767	Right-handed alpha
Helix 32	AD5	B	56	61	Right-handed alpha
Helix 33	AD6	B	79	94	Right-handed alpha
Helix 34	AD7	B	113	127	Right-handed alpha
Helix 35	AD8	B	138	147	Right-handed alpha
Helix 36	AD9	B	182	196	Right-handed alpha
Helix 37	AE1	B	203	218	Right-handed alpha
Helix 38	AE2	B	223	234	Right-handed alpha
Helix 39	AE3	B	253	261	Right-handed alpha
Helix 40	AE4	B	262	263	Right-handed 310
Helix 41	AE5	B	264	269	Right-handed 310
Helix 42	AE6	B	274	286	Right-handed alpha
Helix 43	AE7	B	290	296	Right-handed alpha
Helix 44	AE8	B	302	306	Right-handed 310
Helix 45	AE9	B	309	322	Right-handed alpha
Helix 46	AF1	B	338	350	Right-handed alpha
Helix 47	AF2	B	360	367	Right-handed alpha
Helix 48	AF3	B	369	376	Right-handed alpha
Helix 49	AF4	C	55	60	Right-handed alpha
Helix 50	AF5	C	78	93	Right-handed alpha
Helix 51	AF6	C	112	126	Right-handed alpha
Helix 52	AF7	C	137	146	Right-handed alpha
Helix 53	AF8	C	181	195	Right-handed alpha
Helix 54	AF9	C	202	217	Right-handed alpha
Helix 55	AG1	C	222	233	Right-handed alpha
Helix 56	AG2	C	252	260	Right-handed alpha
Helix 57	AG3	C	261	262	Right-handed 310
Helix 58	AG4	C	263	268	Right-handed 310
Helix 59	AG5	C	273	285	Right-handed alpha
Helix 60	AG6	C	289	295	Right-handed alpha
Helix 61	AG7	C	301	305	Right-handed 310
Helix 62	AG8	C	308	321	Right-handed alpha
Helix 63	AG9	C	338	349	Right-handed alpha
Helix 64	AH1	C	351	355	Right-handed 310
Helix 65	AH2	C	359	365	Right-handed alpha
Helix 66	AH3	C	368	375	Right-handed alpha
Helix 67	AH4	D	55	60	Right-handed alpha
Helix 68	AH5	D	78	92	Right-handed alpha
Helix 69	AH6	D	112	126	Right-handed alpha
Helix 70	AH7	D	137	146	Right-handed alpha
Helix 71	AH8	D	181	195	Right-handed alpha
Helix 72	AH9	D	202	217	Right-handed alpha
Helix 73	AI1	D	222	233	Right-handed alpha
Helix 74	AI2	D	252	260	Right-handed alpha
Helix 75	AI3	D	261	262	Right-handed 310
Helix 76	AI4	D	263	268	Right-handed 310
Helix 77	AI5	D	273	284	Right-handed alpha
Helix 78	AI6	D	286	295	Right-handed alpha
Helix 79	AI7	D	301	305	Right-handed 310
Helix 80	AI8	D	308	321	Right-handed alpha
Helix 81	AI9	D	334	336	Right-handed 310
Helix 82	AJ1	D	337	347	Right-handed alpha
Helix 83	AJ2	D	359	366	Right-handed alpha
Helix 84	AJ3	D	368	375	Right-handed alpha

There are 25 sheets in PDB entry 8RBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	51	first strand
Strand 2	A	37	42	anti-parallel
Strand 3	A	21	27	anti-parallel
Strand 4	A	12	17	anti-parallel
Strand 5	A	61	62	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	106	110	anti-parallel
Strand 3	A	654	661	parallel
Strand 4	A	157	163	parallel
Strand 5	A	431	436	parallel
Strand 6	A	221	228	anti-parallel
Strand 7	A	234	242	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	214	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	348	349	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	381	first strand
Strand 2	A	386	390	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	551	first strand
Strand 2	A	556	560	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	702	first strand
Strand 2	A	747	750	anti-parallel
Strand 3	A	741	743	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	9	12	anti-parallel
Strand 4	B	104	108	parallel
Strand 5	B	132	137	parallel
Strand 6	B	358	359	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	66	69	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	76	77	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	298	301	parallel
Strand 5	B	330	331	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	170	171	anti-parallel
Strand 4	D	41	42	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	248	251	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	17	21	anti-parallel
Strand 3	C	8	11	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	163	anti-parallel
Strand 3	C	151	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	169	170	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	21	anti-parallel
Strand 3	D	8	11	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBF