Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RBG entry

There is 1 chain in PDB entry 8RBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLN 778
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8RBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed 310
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
A
138 154Right-handed alpha
Helix 7
AA7
A
168 185Right-handed alpha
Helix 8
AA8
A
190 207Right-handed alpha
Helix 9
AA9
A
246 251Right-handed alpha
Helix 10
AB1
A
259 268Right-handed alpha
Helix 11
AB2
A
271 278Right-handed 310
Helix 12
AB3
A
281 284Right-handed 310
Helix 13
AB4
A
285 290Right-handed alpha
Helix 14
AB5
A
300 316Right-handed alpha
Helix 15
AB6
A
318 337Right-handed alpha
Helix 16
AB7
A
354 365Right-handed alpha
Helix 17
AB8
A
367 376Right-handed alpha
Helix 18
AB9
A
392 424Right-handed alpha
Helix 19
AC1
A
448 470Right-handed alpha
Helix 20
AC2
A
470 481Right-handed alpha
Helix 21
AC3
A
492 501Right-handed alpha
Helix 22
AC4
A
504 515Right-handed alpha
Helix 23
AC5
A
519 532Right-handed alpha
Helix 24
AC6
A
563 570Right-handed alpha
Helix 25
AC7
A
573 582Right-handed alpha
Helix 26
AC8
A
586 593Right-handed alpha
Helix 27
AC9
A
634 653Right-handed alpha
Helix 28
AD1
A
673 685Right-handed alpha
Helix 29
AD2
A
685 696Right-handed alpha
Helix 30
AD3
A
703 711Right-handed alpha
Helix 31
AD4
A
712 714Right-handed 310
Helix 32
AD5
A
715 719Right-handed 310
Helix 33
AD6
A
722 735Right-handed alpha
Helix 34
AD7
A
737 739Right-handed 310
Helix 35
AD8
A
753 778Right-handed alpha
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There are 7 sheets in PDB entry 8RBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
21 27anti-parallel
Strand 4
A
12 17anti-parallel
Strand 5
A
61 62anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 103first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
654 661parallel
Strand 4
A
157 162parallel
Strand 5
A
431 437parallel
Strand 6
A
221 228anti-parallel
Strand 7
A
234 242anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
347 349anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 381first strand
Strand 2
A
386 390anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
547 551anti-parallel
Strand 3
A
556 560anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 702first strand
Strand 2
A
747 750anti-parallel
Strand 3
A
741 743anti-parallel
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