Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RBK entry

There is 1 chain in PDB entry 8RBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 20GLN 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8RBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
55 59Right-handed 310
Helix 4
AA4
A
62 80Right-handed alpha
Helix 5
AA5
A
82 97Right-handed alpha
Helix 6
AA6
A
100 114Right-handed alpha
Helix 7
AA7
A
116 131Right-handed alpha
Helix 8
AA8
A
134 149Right-handed alpha
Helix 9
AA9
A
150 158Right-handed alpha
Helix 10
AB1
A
159 176Right-handed alpha
Helix 11
AB2
A
189 199Right-handed alpha
Helix 12
AB3
A
209 223Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
261 264Right-handed 310
Helix 15
AB6
A
265 277Right-handed alpha
Helix 16
AB7
A
310 318Right-handed alpha
Helix 17
AB8
A
356 360Right-handed 310
Helix 18
AB9
A
380 389Right-handed alpha
Helix 19
AC1
A
521 530Right-handed alpha
Helix 20
AC2
A
530 549Right-handed alpha
Helix 21
AC3
A
549 554Right-handed alpha
Helix 22
AC4
A
594 601Right-handed alpha
Helix 23
AC5
A
613 627Right-handed alpha
Helix 24
AC6
A
674 684Right-handed alpha
Helix 25
AC7
A
706 714Right-handed alpha
Helix 26
AC8
A
716 721Right-handed alpha
Helix 27
AC9
A
726 731Right-handed alpha
Helix 28
AD1
A
732 734Right-handed 310
Helix 29
AD2
A
742 746Right-handed 310
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There are 11 sheets in PDB entry 8RBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
202 206parallel
Strand 3
A
180 184parallel
Strand 4
A
251 254parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
434 438anti-parallel
Strand 3
A
407 415anti-parallel
Strand 4
A
300 309anti-parallel
Strand 5
A
371 377anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
300 309anti-parallel
Strand 3
A
407 415anti-parallel
Strand 4
A
421 423anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
327 328anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 398first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
465 470anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
446 447anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 636first strand
Strand 2
A
605 609parallel
Strand 3
A
583 587parallel
Strand 4
A
657 661parallel
Strand 5
A
686 693parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 741first strand
Strand 2
A
812 823anti-parallel
Strand 3
A
782 794anti-parallel
Strand 4
A
696 701anti-parallel
Strand 5
A
755 761anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 741first strand
Strand 2
A
812 823anti-parallel
Strand 3
A
782 794anti-parallel
Strand 4
A
800 802anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 705first strand
Strand 2
A
749 750anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 777first strand
Strand 2
A
828 836anti-parallel
Strand 3
A
839 845anti-parallel
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