Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RBO entry

There are 11 chains in PDB entry 8RBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 901
B	ASP 8	ARG 1116
C	VAL 1	GLN 390
D	GLY 3	THR 260
E	MET 1	LYS 189
F	ILE 2	LYS 117
H	PHE 7	GLU 81
K	MET 1	PRO 56
L	MET 1	LYS 94
N	MET 1	TYR 65
P	VAL 2	ILE 49

There are127 helices in PDB entry 8RBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	22	Right-handed alpha
Helix 2	AA2	A	85	96	Right-handed alpha
Helix 3	AA3	A	106	119	Right-handed alpha
Helix 4	AA4	A	123	141	Right-handed alpha
Helix 5	AA5	A	168	172	Right-handed 310
Helix 6	AA6	A	179	189	Right-handed alpha
Helix 7	AA7	A	194	199	Right-handed 310
Helix 8	AA8	A	206	209	Right-handed 310
Helix 9	AA9	A	236	259	Right-handed alpha
Helix 10	AB1	A	261	281	Right-handed alpha
Helix 11	AB2	A	300	306	Right-handed alpha
Helix 12	AB3	A	344	350	Right-handed alpha
Helix 13	AB4	A	360	371	Right-handed alpha
Helix 14	AB5	A	395	403	Right-handed alpha
Helix 15	AB6	A	428	430	Right-handed 310
Helix 16	AB7	A	451	456	Right-handed alpha
Helix 17	AB8	A	471	482	Right-handed alpha
Helix 18	AB9	A	483	488	Right-handed 310
Helix 19	AC1	A	502	513	Right-handed alpha
Helix 20	AC2	A	519	531	Right-handed alpha
Helix 21	AC3	A	545	547	Right-handed 310
Helix 22	AC4	A	553	559	Right-handed alpha
Helix 23	AC5	A	576	590	Right-handed alpha
Helix 24	AC6	A	594	601	Right-handed alpha
Helix 25	AC7	A	620	625	Right-handed alpha
Helix 26	AC8	A	629	639	Right-handed alpha
Helix 27	AC9	A	640	663	Right-handed alpha
Helix 28	AD1	A	667	672	Right-handed 310
Helix 29	AD2	A	674	701	Right-handed alpha
Helix 30	AD3	A	711	738	Right-handed alpha
Helix 31	AD4	A	743	751	Right-handed alpha
Helix 32	AD5	A	756	765	Right-handed alpha
Helix 33	AD6	A	796	799	Right-handed 310
Helix 34	AD7	A	811	847	Right-handed alpha
Helix 35	AD8	A	869	873	Right-handed 310
Helix 36	AD9	A	887	901	Right-handed alpha
Helix 37	AE1	B	10	25	Right-handed alpha
Helix 38	AE2	B	28	51	Right-handed alpha
Helix 39	AE3	B	85	93	Right-handed alpha
Helix 40	AE4	B	138	146	Right-handed alpha
Helix 41	AE5	B	225	232	Right-handed alpha
Helix 42	AE6	B	236	245	Right-handed alpha
Helix 43	AE7	B	247	261	Right-handed alpha
Helix 44	AE8	B	266	279	Right-handed alpha
Helix 45	AE9	B	283	299	Right-handed alpha
Helix 46	AF1	B	300	304	Right-handed 310
Helix 47	AF2	B	306	308	Right-handed 310
Helix 48	AF3	B	309	329	Right-handed alpha
Helix 49	AF4	B	347	378	Right-handed alpha
Helix 50	AF5	B	379	386	Right-handed alpha
Helix 51	AF6	B	386	394	Right-handed alpha
Helix 52	AF7	B	397	411	Right-handed alpha
Helix 53	AF8	B	428	436	Right-handed alpha
Helix 54	AF9	B	449	454	Right-handed alpha
Helix 55	AG1	B	456	460	Right-handed 310
Helix 56	AG2	B	491	503	Right-handed alpha
Helix 57	AG3	B	531	546	Right-handed alpha
Helix 58	AG4	B	587	596	Right-handed alpha
Helix 59	AG5	B	600	607	Right-handed alpha
Helix 60	AG6	B	616	621	Right-handed 310
Helix 61	AG7	B	626	630	Right-handed 310
Helix 62	AG8	B	640	645	Right-handed 310
Helix 63	AG9	B	647	652	Right-handed 310
Helix 64	AH1	B	654	658	Right-handed 310
Helix 65	AH2	B	659	670	Right-handed alpha
Helix 66	AH3	B	702	708	Right-handed alpha
Helix 67	AH4	B	709	713	Right-handed 310
Helix 68	AH5	B	739	744	Right-handed alpha
Helix 69	AH6	B	891	895	Right-handed 310
Helix 70	AH7	B	909	913	Right-handed 310
Helix 71	AH8	B	918	935	Right-handed alpha
Helix 72	AH9	B	947	958	Right-handed alpha
Helix 73	AI1	B	994	998	Right-handed 310
Helix 74	AI2	B	1027	1038	Right-handed alpha
Helix 75	AI3	B	1039	1048	Right-handed alpha
Helix 76	AI4	B	1093	1105	Right-handed alpha
Helix 77	AI5	C	2	14	Right-handed alpha
Helix 78	AI6	C	18	36	Right-handed alpha
Helix 79	AI7	C	39	57	Right-handed alpha
Helix 80	AI8	C	64	75	Right-handed alpha
Helix 81	AI9	C	76	79	Right-handed 310
Helix 82	AJ1	C	98	108	Right-handed alpha
Helix 83	AJ2	C	128	140	Right-handed alpha
Helix 84	AJ3	C	144	147	Right-handed alpha
Helix 85	AJ4	C	165	173	Right-handed alpha
Helix 86	AJ5	C	175	187	Right-handed alpha
Helix 87	AJ6	C	203	208	Right-handed 310
Helix 88	AJ7	C	212	222	Right-handed alpha
Helix 89	AJ8	C	250	255	Right-handed alpha
Helix 90	AJ9	C	269	277	Right-handed alpha
Helix 91	AK1	C	278	298	Right-handed alpha
Helix 92	AK2	C	302	314	Right-handed alpha
Helix 93	AK3	C	327	331	Right-handed 310
Helix 94	AK4	C	333	341	Right-handed alpha
Helix 95	AK5	C	342	354	Right-handed alpha
Helix 96	AK6	C	361	369	Right-handed alpha
Helix 97	AK7	C	374	379	Right-handed 310
Helix 98	AK8	D	24	38	Right-handed alpha
Helix 99	AK9	D	57	68	Right-handed alpha
Helix 100	AL1	D	104	106	Right-handed 310
Helix 101	AL2	D	145	149	Right-handed 310
Helix 102	AL3	D	169	181	Right-handed alpha
Helix 103	AL4	D	203	209	Right-handed 310
Helix 104	AL5	D	233	258	Right-handed alpha
Helix 105	AL6	E	14	18	Right-handed 310
Helix 106	AL7	E	21	34	Right-handed alpha
Helix 107	AL8	E	111	114	Right-handed 310
Helix 108	AL9	E	172	189	Right-handed alpha
Helix 109	AM1	F	13	16	Right-handed 310
Helix 110	AM2	F	17	31	Right-handed alpha
Helix 111	AM3	F	41	51	Right-handed alpha
Helix 112	AM4	F	55	70	Right-handed alpha
Helix 113	AM5	F	74	85	Right-handed alpha
Helix 114	AM6	F	88	99	Right-handed alpha
Helix 115	AM7	F	104	116	Right-handed alpha
Helix 116	AM8	H	8	12	Right-handed 310
Helix 117	AM9	H	22	33	Right-handed alpha
Helix 118	AN1	H	36	40	Right-handed 310
Helix 119	AN2	H	47	54	Right-handed alpha
Helix 120	AN3	K	5	23	Right-handed alpha
Helix 121	AN4	K	35	47	Right-handed alpha
Helix 122	AN5	L	21	33	Right-handed alpha
Helix 123	AN6	L	66	94	Right-handed alpha
Helix 124	AN7	N	14	16	Right-handed 310
Helix 125	AN8	N	17	28	Right-handed alpha
Helix 126	AN9	N	30	38	Right-handed alpha
Helix 127	AO1	N	42	51	Right-handed alpha

There are 41 sheets in PDB entry 8RBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1114	first strand
Strand 2	A	4	12	anti-parallel
Strand 3	C	356	357	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	81	first strand
Strand 2	A	211	217	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	161	162	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	B	1024	1026	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1000	1002	first strand
Strand 2	A	324	331	anti-parallel
Strand 3	A	463	467	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	432	440	anti-parallel
Strand 6	A	339	343	parallel
Strand 7	A	445	447	anti-parallel
Strand 8	A	324	331	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	408	412	anti-parallel
Strand 3	A	378	382	anti-parallel
Strand 4	A	388	390	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	549	552	anti-parallel
Strand 3	A	542	543	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	570	first strand
Strand 2	A	606	610	anti-parallel
Strand 3	A	613	616	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	768	769	first strand
Strand 2	A	801	802	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	772	first strand
Strand 2	A	775	776	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	851	852	first strand
Strand 2	A	858	859	anti-parallel
Strand 3	A	865	867	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	69	anti-parallel
Strand 3	B	97	108	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	60	69	anti-parallel
Strand 3	B	97	108	anti-parallel
Strand 4	B	116	124	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	81	83	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	421	423	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	167	171	anti-parallel
Strand 3	B	438	440	parallel
Strand 4	B	477	479	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	186	195	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	212	215	anti-parallel
Strand 5	B	223	224	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	610	613	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	636	637	anti-parallel
Strand 4	B	623	624	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	517	521	anti-parallel
Strand 4	B	562	566	parallel
Strand 5	B	553	557	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	749	758	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	B	800	801	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	692	first strand
Strand 2	B	749	758	anti-parallel
Strand 3	B	858	868	anti-parallel
Strand 4	B	843	852	anti-parallel
Strand 5	P	34	36	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	701	first strand
Strand 2	B	938	939	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	965	966	first strand
Strand 2	B	981	990	anti-parallel
Strand 3	B	875	878	anti-parallel
Strand 4	B	883	890	anti-parallel
Strand 5	B	734	738	parallel
Strand 6	B	906	908	anti-parallel
Strand 7	B	717	723	parallel
Strand 8	B	981	990	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	769	770	first strand
Strand 2	B	810	812	anti-parallel
Strand 3	B	831	832	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	806	808	first strand
Strand 2	B	835	836	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	898	first strand
Strand 2	B	968	969	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1053	1059	first strand
Strand 2	B	1086	1092	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1067	1069	first strand
Strand 2	B	1074	1076	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	238	first strand
Strand 2	C	241	247	anti-parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	266	267	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	223	224	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	154	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	198	200	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	43	59	anti-parallel
Strand 3	E	66	77	anti-parallel
Strand 4	E	2	13	anti-parallel
Strand 5	F	6	11	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	43	59	anti-parallel
Strand 3	C	380	383	anti-parallel
Strand 4	K	51	54	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	11	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	213	227	anti-parallel
Strand 4	D	152	164	anti-parallel
Strand 5	D	190	194	anti-parallel
Strand 6	D	184	187	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	88	96	anti-parallel
Strand 3	D	130	140	anti-parallel
Strand 4	D	41	52	anti-parallel
Strand 5	P	44	47	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	102	first strand
Strand 2	D	121	125	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	93	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	105	109	anti-parallel
Strand 4	E	161	164	parallel
Strand 5	E	141	149	anti-parallel
Strand 6	E	85	93	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	20	first strand
Strand 2	H	60	65	anti-parallel
Strand 3	H	73	80	anti-parallel
Strand 4	H	42	44	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	9	first strand
Strand 2	L	12	18	anti-parallel
Strand 3	L	56	61	anti-parallel
Strand 4	L	38	44	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	5	7	first strand
Strand 2	P	14	16	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RBO