Analysis of interatomic Contacts of Structural Units in PDB entry:
8RC3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RC3 entry

There are 11 chains in PDB entry 8RC3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 343
B	MET 1	LYS 345
C	MET 1	LYS 345
D	MET 1	LYS 345
E	MET 1	LYS 345
F	MET 1	ALA 222
G	MET 1	LEU 240
H	G -7	G 52
I	G -30	T 9
J	A -9	G 6
M	MET 1	GLY 229

There are 84 helices in PDB entry 8RC3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	82	Right-handed alpha
Helix 2	AA2	A	83	90	Right-handed alpha
Helix 3	AA3	A	96	105	Right-handed alpha
Helix 4	AA4	A	117	126	Right-handed alpha
Helix 5	AA5	A	164	168	Right-handed 310
Helix 6	AA6	A	183	188	Right-handed 310
Helix 7	AA7	A	200	221	Right-handed alpha
Helix 8	AA8	A	265	278	Right-handed alpha
Helix 9	AA9	A	279	282	Right-handed 310
Helix 10	AB1	A	315	317	Right-handed 310
Helix 11	AB2	A	318	331	Right-handed alpha
Helix 12	AB3	A	333	341	Right-handed alpha
Helix 13	AB4	B	66	82	Right-handed alpha
Helix 14	AB5	B	82	90	Right-handed alpha
Helix 15	AB6	B	95	105	Right-handed alpha
Helix 16	AB7	B	117	126	Right-handed alpha
Helix 17	AB8	B	129	134	Right-handed alpha
Helix 18	AB9	B	153	155	Right-handed 310
Helix 19	AC1	B	156	161	Right-handed alpha
Helix 20	AC2	B	164	168	Right-handed 310
Helix 21	AC3	B	183	188	Right-handed 310
Helix 22	AC4	B	200	222	Right-handed alpha
Helix 23	AC5	B	265	278	Right-handed alpha
Helix 24	AC6	B	318	332	Right-handed alpha
Helix 25	AC7	B	333	342	Right-handed alpha
Helix 26	AC8	C	66	82	Right-handed alpha
Helix 27	AC9	C	82	90	Right-handed alpha
Helix 28	AD1	C	95	105	Right-handed alpha
Helix 29	AD2	C	117	126	Right-handed alpha
Helix 30	AD3	C	153	155	Right-handed 310
Helix 31	AD4	C	156	161	Right-handed alpha
Helix 32	AD5	C	183	188	Right-handed alpha
Helix 33	AD6	C	192	197	Right-handed 310
Helix 34	AD7	C	200	222	Right-handed alpha
Helix 35	AD8	C	265	278	Right-handed alpha
Helix 36	AD9	C	315	317	Right-handed 310
Helix 37	AE1	C	318	331	Right-handed alpha
Helix 38	AE2	C	334	342	Right-handed alpha
Helix 39	AE3	D	66	82	Right-handed alpha
Helix 40	AE4	D	82	90	Right-handed alpha
Helix 41	AE5	D	95	105	Right-handed alpha
Helix 42	AE6	D	117	126	Right-handed alpha
Helix 43	AE7	D	129	133	Right-handed alpha
Helix 44	AE8	D	156	161	Right-handed alpha
Helix 45	AE9	D	164	168	Right-handed 310
Helix 46	AF1	D	184	188	Right-handed 310
Helix 47	AF2	D	192	197	Right-handed 310
Helix 48	AF3	D	200	216	Right-handed alpha
Helix 49	AF4	D	265	278	Right-handed alpha
Helix 50	AF5	D	279	282	Right-handed 310
Helix 51	AF6	D	315	317	Right-handed 310
Helix 52	AF7	D	318	330	Right-handed alpha
Helix 53	AF8	D	334	342	Right-handed alpha
Helix 54	AF9	E	66	82	Right-handed alpha
Helix 55	AG1	E	82	91	Right-handed alpha
Helix 56	AG2	E	95	105	Right-handed alpha
Helix 57	AG3	E	117	126	Right-handed alpha
Helix 58	AG4	E	129	134	Right-handed alpha
Helix 59	AG5	E	156	161	Right-handed alpha
Helix 60	AG6	E	265	279	Right-handed alpha
Helix 61	AG7	E	280	282	Right-handed 310
Helix 62	AG8	E	318	332	Right-handed alpha
Helix 63	AG9	E	334	342	Right-handed alpha
Helix 64	AH1	F	22	39	Right-handed alpha
Helix 65	AH2	F	44	48	Right-handed 310
Helix 66	AH3	F	89	99	Right-handed alpha
Helix 67	AH4	F	137	147	Right-handed alpha
Helix 68	AH5	F	154	158	Right-handed 310
Helix 69	AH6	F	208	212	Right-handed 310
Helix 70	AH7	G	3	5	Right-handed 310
Helix 71	AH8	G	6	12	Right-handed alpha
Helix 72	AH9	G	67	73	Right-handed alpha
Helix 73	AI1	G	74	81	Right-handed alpha
Helix 74	AI2	G	96	106	Right-handed alpha
Helix 75	AI3	G	149	164	Right-handed alpha
Helix 76	AI4	G	189	194	Right-handed alpha
Helix 77	AI5	G	197	206	Right-handed alpha
Helix 78	AI6	G	208	219	Right-handed alpha
Helix 79	AI7	G	232	240	Right-handed alpha
Helix 80	AI8	M	15	30	Right-handed alpha
Helix 81	AI9	M	31	39	Right-handed alpha
Helix 82	AJ1	M	69	92	Right-handed alpha
Helix 83	AJ2	M	127	134	Right-handed alpha
Helix 84	AJ3	M	136	160	Right-handed alpha

There are 32 sheets in PDB entry 8RC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	150	151	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	295	302	anti-parallel
Strand 5	A	305	306	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	242	249	parallel
Strand 4	A	174	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	58	63	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	F	102	103	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	312	313	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	151	first strand
Strand 2	B	254	261	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	295	302	anti-parallel
Strand 5	B	305	306	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	242	249	parallel
Strand 4	B	174	181	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	57	63	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	151	first strand
Strand 2	C	254	261	anti-parallel
Strand 3	C	2	9	anti-parallel
Strand 4	C	295	302	anti-parallel
Strand 5	C	305	306	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	242	249	parallel
Strand 4	C	174	181	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	51	first strand
Strand 2	C	57	63	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	312	313	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	151	first strand
Strand 2	D	254	261	anti-parallel
Strand 3	D	2	9	anti-parallel
Strand 4	D	295	302	anti-parallel
Strand 5	D	305	306	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	242	249	parallel
Strand 4	D	174	181	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	51	first strand
Strand 2	D	57	63	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	140	141	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	309	first strand
Strand 2	D	312	313	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	151	first strand
Strand 2	E	254	261	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	295	302	anti-parallel
Strand 5	E	305	306	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	245	249	parallel
Strand 4	E	174	178	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	51	first strand
Strand 2	E	57	63	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	128	135	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	162	169	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	119	126	anti-parallel
Strand 3	F	80	86	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	64	66	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	200	first strand
Strand 2	F	213	218	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	22	first strand
Strand 2	G	42	45	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	36	37	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	84	86	anti-parallel
Strand 3	G	113	116	anti-parallel
Strand 4	G	137	141	parallel
Strand 5	G	144	148	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	55	56	first strand
Strand 2	M	65	68	anti-parallel
Strand 3	M	2	8	anti-parallel
Strand 4	M	99	105	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	108	122	first strand
Strand 2	M	190	204	anti-parallel
Strand 3	M	170	173	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	108	122	first strand
Strand 2	M	190	204	anti-parallel
Strand 3	M	176	180	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	207	209	first strand
Strand 2	M	220	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RC3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RC3