Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RCD entry

There are 16 chains in PDB entry 8RCD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 21	ASP 339
B	GLY 21	ASP 339
C	GLY 21	ASP 339
D	GLY 21	ASP 339
E	GLY 21	ASP 339
F	GLY 21	ASP 339
G	GLY 21	ASP 339
H	GLY 21	ASP 339
I	G 1	G 2
I	A 4	T 5
I	C 7	A 8
I	T 10	G 11
I	T 13	A 14
I	A 16	C 17
I	T 19	G 20
I	G 22	C 23

There are136 helices in PDB entry 8RCD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	32	Right-handed 310
Helix 2	AA2	A	34	45	Right-handed alpha
Helix 3	AA3	A	48	55	Right-handed alpha
Helix 4	AA4	A	56	62	Right-handed alpha
Helix 5	AA5	A	67	82	Right-handed alpha
Helix 6	AA6	A	89	97	Right-handed alpha
Helix 7	AA7	A	106	113	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed alpha
Helix 9	AA9	A	145	146	Right-handed 310
Helix 10	AB1	A	147	151	Right-handed 310
Helix 11	AB2	A	167	178	Right-handed alpha
Helix 12	AB3	A	181	186	Right-handed alpha
Helix 13	AB4	A	196	214	Right-handed alpha
Helix 14	AB5	A	227	232	Right-handed alpha
Helix 15	AB6	A	234	236	Right-handed 310
Helix 16	AB7	A	237	260	Right-handed alpha
Helix 17	AB8	A	289	296	Right-handed alpha
Helix 18	AB9	B	24	32	Right-handed 310
Helix 19	AC1	B	34	45	Right-handed alpha
Helix 20	AC2	B	48	55	Right-handed alpha
Helix 21	AC3	B	56	62	Right-handed alpha
Helix 22	AC4	B	67	82	Right-handed alpha
Helix 23	AC5	B	89	97	Right-handed alpha
Helix 24	AC6	B	106	113	Right-handed alpha
Helix 25	AC7	B	132	144	Right-handed alpha
Helix 26	AC8	B	145	146	Right-handed 310
Helix 27	AC9	B	147	151	Right-handed 310
Helix 28	AD1	B	167	178	Right-handed alpha
Helix 29	AD2	B	181	186	Right-handed alpha
Helix 30	AD3	B	196	214	Right-handed alpha
Helix 31	AD4	B	227	232	Right-handed alpha
Helix 32	AD5	B	234	236	Right-handed 310
Helix 33	AD6	B	237	260	Right-handed alpha
Helix 34	AD7	B	289	296	Right-handed alpha
Helix 35	AD8	C	24	32	Right-handed 310
Helix 36	AD9	C	34	45	Right-handed alpha
Helix 37	AE1	C	48	55	Right-handed alpha
Helix 38	AE2	C	56	62	Right-handed alpha
Helix 39	AE3	C	67	82	Right-handed alpha
Helix 40	AE4	C	89	97	Right-handed alpha
Helix 41	AE5	C	106	113	Right-handed alpha
Helix 42	AE6	C	132	144	Right-handed alpha
Helix 43	AE7	C	145	146	Right-handed 310
Helix 44	AE8	C	147	151	Right-handed 310
Helix 45	AE9	C	167	178	Right-handed alpha
Helix 46	AF1	C	181	186	Right-handed alpha
Helix 47	AF2	C	196	214	Right-handed alpha
Helix 48	AF3	C	227	232	Right-handed alpha
Helix 49	AF4	C	234	236	Right-handed 310
Helix 50	AF5	C	237	260	Right-handed alpha
Helix 51	AF6	C	289	296	Right-handed alpha
Helix 52	AF7	D	24	32	Right-handed 310
Helix 53	AF8	D	34	45	Right-handed alpha
Helix 54	AF9	D	48	55	Right-handed alpha
Helix 55	AG1	D	56	62	Right-handed alpha
Helix 56	AG2	D	67	82	Right-handed alpha
Helix 57	AG3	D	89	97	Right-handed alpha
Helix 58	AG4	D	106	113	Right-handed alpha
Helix 59	AG5	D	132	144	Right-handed alpha
Helix 60	AG6	D	145	146	Right-handed 310
Helix 61	AG7	D	147	151	Right-handed 310
Helix 62	AG8	D	167	178	Right-handed alpha
Helix 63	AG9	D	181	186	Right-handed alpha
Helix 64	AH1	D	196	214	Right-handed alpha
Helix 65	AH2	D	227	232	Right-handed alpha
Helix 66	AH3	D	234	236	Right-handed 310
Helix 67	AH4	D	237	260	Right-handed alpha
Helix 68	AH5	D	289	296	Right-handed alpha
Helix 69	AH6	E	24	32	Right-handed 310
Helix 70	AH7	E	34	45	Right-handed alpha
Helix 71	AH8	E	48	55	Right-handed alpha
Helix 72	AH9	E	56	62	Right-handed alpha
Helix 73	AI1	E	67	82	Right-handed alpha
Helix 74	AI2	E	89	97	Right-handed alpha
Helix 75	AI3	E	106	113	Right-handed alpha
Helix 76	AI4	E	132	144	Right-handed alpha
Helix 77	AI5	E	145	146	Right-handed 310
Helix 78	AI6	E	147	151	Right-handed 310
Helix 79	AI7	E	167	178	Right-handed alpha
Helix 80	AI8	E	181	186	Right-handed alpha
Helix 81	AI9	E	196	214	Right-handed alpha
Helix 82	AJ1	E	227	232	Right-handed alpha
Helix 83	AJ2	E	234	236	Right-handed 310
Helix 84	AJ3	E	237	260	Right-handed alpha
Helix 85	AJ4	E	289	296	Right-handed alpha
Helix 86	AJ5	F	24	32	Right-handed 310
Helix 87	AJ6	F	34	45	Right-handed alpha
Helix 88	AJ7	F	48	55	Right-handed alpha
Helix 89	AJ8	F	56	62	Right-handed alpha
Helix 90	AJ9	F	67	82	Right-handed alpha
Helix 91	AK1	F	89	97	Right-handed alpha
Helix 92	AK2	F	106	113	Right-handed alpha
Helix 93	AK3	F	132	144	Right-handed alpha
Helix 94	AK4	F	145	146	Right-handed 310
Helix 95	AK5	F	147	151	Right-handed 310
Helix 96	AK6	F	167	178	Right-handed alpha
Helix 97	AK7	F	181	186	Right-handed alpha
Helix 98	AK8	F	196	214	Right-handed alpha
Helix 99	AK9	F	227	232	Right-handed alpha
Helix 100	AL1	F	234	236	Right-handed 310
Helix 101	AL2	F	237	260	Right-handed alpha
Helix 102	AL3	F	289	296	Right-handed alpha
Helix 103	AL4	G	24	32	Right-handed 310
Helix 104	AL5	G	34	45	Right-handed alpha
Helix 105	AL6	G	48	55	Right-handed alpha
Helix 106	AL7	G	56	62	Right-handed alpha
Helix 107	AL8	G	67	82	Right-handed alpha
Helix 108	AL9	G	89	97	Right-handed alpha
Helix 109	AM1	G	106	113	Right-handed alpha
Helix 110	AM2	G	132	144	Right-handed alpha
Helix 111	AM3	G	145	146	Right-handed 310
Helix 112	AM4	G	147	151	Right-handed 310
Helix 113	AM5	G	167	178	Right-handed alpha
Helix 114	AM6	G	181	186	Right-handed alpha
Helix 115	AM7	G	196	214	Right-handed alpha
Helix 116	AM8	G	227	232	Right-handed alpha
Helix 117	AM9	G	234	236	Right-handed 310
Helix 118	AN1	G	237	260	Right-handed alpha
Helix 119	AN2	G	289	296	Right-handed alpha
Helix 120	AN3	H	24	32	Right-handed 310
Helix 121	AN4	H	34	45	Right-handed alpha
Helix 122	AN5	H	48	55	Right-handed alpha
Helix 123	AN6	H	56	62	Right-handed alpha
Helix 124	AN7	H	67	82	Right-handed alpha
Helix 125	AN8	H	88	97	Right-handed alpha
Helix 126	AN9	H	106	113	Right-handed alpha
Helix 127	AO1	H	132	144	Right-handed alpha
Helix 128	AO2	H	145	146	Right-handed 310
Helix 129	AO3	H	147	151	Right-handed 310
Helix 130	AO4	H	167	178	Right-handed alpha
Helix 131	AO5	H	181	186	Right-handed alpha
Helix 132	AO6	H	196	214	Right-handed alpha
Helix 133	AO7	H	227	232	Right-handed alpha
Helix 134	AO8	H	234	236	Right-handed 310
Helix 135	AO9	H	237	260	Right-handed alpha
Helix 136	AP1	H	289	296	Right-handed alpha

There are 24 sheets in PDB entry 8RCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	156	161	parallel
Strand 4	B	216	222	parallel
Strand 5	B	262	266	parallel
Strand 6	B	122	126	parallel
Strand 7	B	298	306	parallel
Strand 8	B	309	316	anti-parallel
Strand 9	B	327	330	anti-parallel
Strand 10	B	333	336	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	117	118	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	156	161	parallel
Strand 3	A	216	222	parallel
Strand 4	A	262	266	parallel
Strand 5	A	122	126	parallel
Strand 6	A	298	306	parallel
Strand 7	A	309	316	anti-parallel
Strand 8	A	327	330	anti-parallel
Strand 9	A	333	336	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	284	286	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	156	161	parallel
Strand 4	C	216	222	parallel
Strand 5	C	262	266	parallel
Strand 6	C	122	126	parallel
Strand 7	C	298	306	parallel
Strand 8	C	309	316	anti-parallel
Strand 9	C	327	330	anti-parallel
Strand 10	C	333	336	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	284	286	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	D	189	193	anti-parallel
Strand 3	D	156	161	parallel
Strand 4	D	216	222	parallel
Strand 5	D	262	266	parallel
Strand 6	D	122	126	parallel
Strand 7	D	298	306	parallel
Strand 8	D	309	316	anti-parallel
Strand 9	D	327	330	anti-parallel
Strand 10	D	333	336	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	117	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	C	284	286	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	156	161	parallel
Strand 4	E	216	222	parallel
Strand 5	E	262	266	parallel
Strand 6	E	122	126	parallel
Strand 7	E	298	306	parallel
Strand 8	E	309	316	anti-parallel
Strand 9	E	327	330	anti-parallel
Strand 10	E	333	336	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	117	118	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	271	first strand
Strand 2	D	284	286	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	F	189	193	anti-parallel
Strand 3	F	156	161	parallel
Strand 4	F	216	222	parallel
Strand 5	F	262	266	parallel
Strand 6	F	122	126	parallel
Strand 7	F	298	306	parallel
Strand 8	F	309	316	anti-parallel
Strand 9	F	327	330	anti-parallel
Strand 10	F	333	336	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	E	284	286	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	156	161	parallel
Strand 4	G	216	222	parallel
Strand 5	G	262	266	parallel
Strand 6	G	122	126	parallel
Strand 7	G	298	306	parallel
Strand 8	G	309	316	anti-parallel
Strand 9	G	327	330	anti-parallel
Strand 10	G	333	336	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	117	118	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	271	first strand
Strand 2	F	284	286	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	H	189	193	anti-parallel
Strand 3	H	156	161	parallel
Strand 4	H	216	222	parallel
Strand 5	H	262	266	parallel
Strand 6	H	122	126	parallel
Strand 7	H	298	306	parallel
Strand 8	H	309	316	anti-parallel
Strand 9	H	327	330	anti-parallel
Strand 10	H	333	336	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	117	118	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	284	286	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	117	118	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	269	271	first strand
Strand 2	H	284	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RCD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCD