Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RCF entry

There are 17 chains in PDB entry 8RCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 21	ASP 339
B	GLY 21	ASP 339
C	GLY 21	ASP 339
D	GLY 21	ASP 339
E	GLY 21	ASP 339
F	GLY 21	ASP 339
G	GLY 21	ASP 339
H	GLY 21	ASP 339
I	T 1	G 2
I	T 4	G 5
I	T 7	G 8
I	T 10	G 11
I	T 13	G 14
I	T 16	G 17
I	T 19	G 20
I	T 22	G 23
J	C 1	A 23

There are130 helices in PDB entry 8RCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	34	43	Right-handed alpha
Helix 3	AA3	A	48	55	Right-handed alpha
Helix 4	AA4	A	56	62	Right-handed alpha
Helix 5	AA5	A	67	80	Right-handed alpha
Helix 6	AA6	A	89	98	Right-handed alpha
Helix 7	AA7	A	106	113	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed alpha
Helix 9	AA9	A	145	146	Right-handed 310
Helix 10	AB1	A	147	151	Right-handed 310
Helix 11	AB2	A	167	178	Right-handed alpha
Helix 12	AB3	A	181	188	Right-handed alpha
Helix 13	AB4	A	196	214	Right-handed alpha
Helix 14	AB5	A	225	232	Right-handed alpha
Helix 15	AB6	A	233	260	Right-handed alpha
Helix 16	AB7	A	288	296	Right-handed alpha
Helix 17	AB8	B	26	31	Right-handed alpha
Helix 18	AB9	B	34	43	Right-handed alpha
Helix 19	AC1	B	48	55	Right-handed alpha
Helix 20	AC2	B	56	62	Right-handed alpha
Helix 21	AC3	B	67	80	Right-handed alpha
Helix 22	AC4	B	89	98	Right-handed alpha
Helix 23	AC5	B	106	113	Right-handed alpha
Helix 24	AC6	B	132	144	Right-handed alpha
Helix 25	AC7	B	145	146	Right-handed 310
Helix 26	AC8	B	147	151	Right-handed 310
Helix 27	AC9	B	167	178	Right-handed alpha
Helix 28	AD1	B	181	188	Right-handed alpha
Helix 29	AD2	B	196	214	Right-handed alpha
Helix 30	AD3	B	225	232	Right-handed alpha
Helix 31	AD4	B	233	260	Right-handed alpha
Helix 32	AD5	B	288	296	Right-handed alpha
Helix 33	AD6	C	26	31	Right-handed alpha
Helix 34	AD7	C	34	43	Right-handed alpha
Helix 35	AD8	C	48	55	Right-handed alpha
Helix 36	AD9	C	56	62	Right-handed alpha
Helix 37	AE1	C	67	80	Right-handed alpha
Helix 38	AE2	C	89	98	Right-handed alpha
Helix 39	AE3	C	106	113	Right-handed alpha
Helix 40	AE4	C	132	144	Right-handed alpha
Helix 41	AE5	C	145	146	Right-handed 310
Helix 42	AE6	C	147	151	Right-handed 310
Helix 43	AE7	C	167	178	Right-handed alpha
Helix 44	AE8	C	181	188	Right-handed alpha
Helix 45	AE9	C	196	214	Right-handed alpha
Helix 46	AF1	C	225	232	Right-handed alpha
Helix 47	AF2	C	233	260	Right-handed alpha
Helix 48	AF3	C	288	296	Right-handed alpha
Helix 49	AF4	D	26	31	Right-handed alpha
Helix 50	AF5	D	34	43	Right-handed alpha
Helix 51	AF6	D	48	55	Right-handed alpha
Helix 52	AF7	D	56	62	Right-handed alpha
Helix 53	AF8	D	67	80	Right-handed alpha
Helix 54	AF9	D	89	98	Right-handed alpha
Helix 55	AG1	D	106	113	Right-handed alpha
Helix 56	AG2	D	132	144	Right-handed alpha
Helix 57	AG3	D	145	146	Right-handed 310
Helix 58	AG4	D	147	151	Right-handed 310
Helix 59	AG5	D	167	178	Right-handed alpha
Helix 60	AG6	D	181	188	Right-handed alpha
Helix 61	AG7	D	196	214	Right-handed alpha
Helix 62	AG8	D	225	232	Right-handed alpha
Helix 63	AG9	D	233	260	Right-handed alpha
Helix 64	AH1	D	288	296	Right-handed alpha
Helix 65	AH2	E	26	31	Right-handed alpha
Helix 66	AH3	E	34	43	Right-handed alpha
Helix 67	AH4	E	48	55	Right-handed alpha
Helix 68	AH5	E	56	62	Right-handed alpha
Helix 69	AH6	E	67	80	Right-handed alpha
Helix 70	AH7	E	89	98	Right-handed alpha
Helix 71	AH8	E	106	113	Right-handed alpha
Helix 72	AH9	E	132	144	Right-handed alpha
Helix 73	AI1	E	145	146	Right-handed 310
Helix 74	AI2	E	147	151	Right-handed 310
Helix 75	AI3	E	167	178	Right-handed alpha
Helix 76	AI4	E	181	188	Right-handed alpha
Helix 77	AI5	E	196	214	Right-handed alpha
Helix 78	AI6	E	225	232	Right-handed alpha
Helix 79	AI7	E	233	260	Right-handed alpha
Helix 80	AI8	E	288	296	Right-handed alpha
Helix 81	AI9	F	26	31	Right-handed alpha
Helix 82	AJ1	F	34	43	Right-handed alpha
Helix 83	AJ2	F	48	55	Right-handed alpha
Helix 84	AJ3	F	56	62	Right-handed alpha
Helix 85	AJ4	F	67	80	Right-handed alpha
Helix 86	AJ5	F	89	98	Right-handed alpha
Helix 87	AJ6	F	106	113	Right-handed alpha
Helix 88	AJ7	F	132	144	Right-handed alpha
Helix 89	AJ8	F	145	146	Right-handed 310
Helix 90	AJ9	F	147	151	Right-handed 310
Helix 91	AK1	F	167	178	Right-handed alpha
Helix 92	AK2	F	181	188	Right-handed alpha
Helix 93	AK3	F	196	214	Right-handed alpha
Helix 94	AK4	F	225	232	Right-handed alpha
Helix 95	AK5	F	233	260	Right-handed alpha
Helix 96	AK6	F	288	296	Right-handed alpha
Helix 97	AK7	G	26	32	Right-handed alpha
Helix 98	AK8	G	34	42	Right-handed alpha
Helix 99	AK9	G	43	45	Right-handed 310
Helix 100	AL1	G	48	55	Right-handed alpha
Helix 101	AL2	G	56	62	Right-handed alpha
Helix 102	AL3	G	67	80	Right-handed alpha
Helix 103	AL4	G	89	97	Right-handed alpha
Helix 104	AL5	G	106	113	Right-handed alpha
Helix 105	AL6	G	132	144	Right-handed alpha
Helix 106	AL7	G	145	146	Right-handed 310
Helix 107	AL8	G	147	151	Right-handed 310
Helix 108	AL9	G	167	178	Right-handed alpha
Helix 109	AM1	G	181	188	Right-handed alpha
Helix 110	AM2	G	196	214	Right-handed alpha
Helix 111	AM3	G	227	232	Right-handed alpha
Helix 112	AM4	G	233	260	Right-handed alpha
Helix 113	AM5	G	288	296	Right-handed alpha
Helix 114	AM6	H	26	32	Right-handed alpha
Helix 115	AM7	H	34	42	Right-handed alpha
Helix 116	AM8	H	43	45	Right-handed 310
Helix 117	AM9	H	48	55	Right-handed alpha
Helix 118	AN1	H	56	62	Right-handed alpha
Helix 119	AN2	H	67	82	Right-handed alpha
Helix 120	AN3	H	88	97	Right-handed alpha
Helix 121	AN4	H	106	113	Right-handed alpha
Helix 122	AN5	H	132	144	Right-handed alpha
Helix 123	AN6	H	145	146	Right-handed 310
Helix 124	AN7	H	147	151	Right-handed 310
Helix 125	AN8	H	167	178	Right-handed alpha
Helix 126	AN9	H	181	188	Right-handed alpha
Helix 127	AO1	H	196	214	Right-handed alpha
Helix 128	AO2	H	227	232	Right-handed alpha
Helix 129	AO3	H	233	260	Right-handed alpha
Helix 130	AO4	H	288	296	Right-handed alpha

There are 24 sheets in PDB entry 8RCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	B	189	193	anti-parallel
Strand 3	B	156	161	parallel
Strand 4	B	216	222	parallel
Strand 5	B	262	267	parallel
Strand 6	B	122	127	parallel
Strand 7	B	298	304	parallel
Strand 8	B	309	316	anti-parallel
Strand 9	B	324	330	anti-parallel
Strand 10	B	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	156	161	parallel
Strand 3	A	216	222	parallel
Strand 4	A	262	267	parallel
Strand 5	A	122	127	parallel
Strand 6	A	298	304	parallel
Strand 7	A	309	316	anti-parallel
Strand 8	A	324	330	anti-parallel
Strand 9	A	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	C	189	193	anti-parallel
Strand 3	C	156	161	parallel
Strand 4	C	216	222	parallel
Strand 5	C	262	267	parallel
Strand 6	C	122	127	parallel
Strand 7	C	298	304	parallel
Strand 8	C	309	316	anti-parallel
Strand 9	C	324	330	anti-parallel
Strand 10	C	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	D	189	193	anti-parallel
Strand 3	D	156	161	parallel
Strand 4	D	216	222	parallel
Strand 5	D	262	267	parallel
Strand 6	D	122	127	parallel
Strand 7	D	298	304	parallel
Strand 8	D	309	316	anti-parallel
Strand 9	D	324	330	anti-parallel
Strand 10	D	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	271	first strand
Strand 2	C	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	156	161	parallel
Strand 4	E	216	222	parallel
Strand 5	E	262	267	parallel
Strand 6	E	122	127	parallel
Strand 7	E	298	304	parallel
Strand 8	E	309	316	anti-parallel
Strand 9	E	324	330	anti-parallel
Strand 10	E	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	271	first strand
Strand 2	D	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	F	189	193	anti-parallel
Strand 3	F	156	161	parallel
Strand 4	F	216	222	parallel
Strand 5	F	262	267	parallel
Strand 6	F	122	127	parallel
Strand 7	F	298	304	parallel
Strand 8	F	309	316	anti-parallel
Strand 9	F	324	330	anti-parallel
Strand 10	F	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	271	first strand
Strand 2	E	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	G	189	193	anti-parallel
Strand 3	G	156	161	parallel
Strand 4	G	216	222	parallel
Strand 5	G	262	267	parallel
Strand 6	G	122	127	parallel
Strand 7	G	298	304	parallel
Strand 8	G	309	316	anti-parallel
Strand 9	G	324	330	anti-parallel
Strand 10	G	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	271	first strand
Strand 2	F	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	88	first strand
Strand 2	H	189	193	anti-parallel
Strand 3	H	156	161	parallel
Strand 4	H	216	222	parallel
Strand 5	H	262	267	parallel
Strand 6	H	122	127	parallel
Strand 7	H	298	304	parallel
Strand 8	H	309	316	anti-parallel
Strand 9	H	324	330	anti-parallel
Strand 10	H	333	335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	284	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	269	271	first strand
Strand 2	H	284	286	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCF