Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RCK entry

There are 4 chains in PDB entry 8RCK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 61	TRP 2549
E	VAL 8	VAL 324
Y	GLU 18	GLU 1331
X	GLU 111	ILE 118

There are176 helices in PDB entry 8RCK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	61	74	Right-handed alpha
Helix 2	AA2	B	83	92	Right-handed alpha
Helix 3	AA3	B	106	115	Right-handed alpha
Helix 4	AA4	B	121	135	Right-handed alpha
Helix 5	AA5	B	138	155	Right-handed alpha
Helix 6	AA6	B	166	179	Right-handed alpha
Helix 7	AA7	B	179	184	Right-handed alpha
Helix 8	AA8	B	186	198	Right-handed alpha
Helix 9	AA9	B	203	212	Right-handed alpha
Helix 10	AB1	B	213	218	Right-handed alpha
Helix 11	AB2	B	219	223	Right-handed 310
Helix 12	AB3	B	234	245	Right-handed alpha
Helix 13	AB4	B	262	274	Right-handed alpha
Helix 14	AB5	B	277	287	Right-handed alpha
Helix 15	AB6	B	387	403	Right-handed alpha
Helix 16	AB7	B	411	423	Right-handed alpha
Helix 17	AB8	B	435	444	Right-handed alpha
Helix 18	AB9	B	447	454	Right-handed 310
Helix 19	AC1	B	455	460	Right-handed alpha
Helix 20	AC2	B	461	463	Right-handed 310
Helix 21	AC3	B	483	488	Right-handed alpha
Helix 22	AC4	B	489	491	Right-handed 310
Helix 23	AC5	B	498	510	Right-handed alpha
Helix 24	AC6	B	514	528	Right-handed alpha
Helix 25	AC7	B	531	549	Right-handed alpha
Helix 26	AC8	B	579	592	Right-handed alpha
Helix 27	AC9	B	600	612	Right-handed alpha
Helix 28	AD1	B	615	631	Right-handed alpha
Helix 29	AD2	B	645	666	Right-handed alpha
Helix 30	AD3	B	668	678	Right-handed alpha
Helix 31	AD4	B	680	684	Right-handed 310
Helix 32	AD5	B	689	701	Right-handed alpha
Helix 33	AD6	B	704	719	Right-handed alpha
Helix 34	AD7	B	720	721	Right-handed 310
Helix 35	AD8	B	722	725	Right-handed 310
Helix 36	AD9	B	726	744	Right-handed alpha
Helix 37	AE1	B	748	760	Right-handed alpha
Helix 38	AE2	B	764	785	Right-handed alpha
Helix 39	AE3	B	792	810	Right-handed alpha
Helix 40	AE4	B	811	815	Right-handed 310
Helix 41	AE5	B	816	830	Right-handed alpha
Helix 42	AE6	B	838	852	Right-handed alpha
Helix 43	AE7	B	856	861	Right-handed alpha
Helix 44	AE8	B	862	873	Right-handed alpha
Helix 45	AE9	B	877	889	Right-handed alpha
Helix 46	AF1	B	895	903	Right-handed alpha
Helix 47	AF2	B	934	939	Right-handed alpha
Helix 48	AF3	B	942	960	Right-handed alpha
Helix 49	AF4	B	961	966	Right-handed 310
Helix 50	AF5	B	967	983	Right-handed alpha
Helix 51	AF6	B	984	988	Right-handed 310
Helix 52	AF7	B	989	1004	Right-handed alpha
Helix 53	AF8	B	1005	1024	Right-handed alpha
Helix 54	AF9	B	1025	1029	Right-handed 310
Helix 55	AG1	B	1030	1041	Right-handed alpha
Helix 56	AG2	B	1045	1063	Right-handed alpha
Helix 57	AG3	B	1066	1073	Right-handed 310
Helix 58	AG4	B	1074	1084	Right-handed alpha
Helix 59	AG5	B	1090	1101	Right-handed alpha
Helix 60	AG6	B	1102	1108	Right-handed 310
Helix 61	AG7	B	1110	1115	Right-handed alpha
Helix 62	AG8	B	1116	1123	Right-handed alpha
Helix 63	AG9	B	1128	1143	Right-handed alpha
Helix 64	AH1	B	1148	1150	Right-handed 310
Helix 65	AH2	B	1151	1166	Right-handed alpha
Helix 66	AH3	B	1169	1185	Right-handed alpha
Helix 67	AH4	B	1186	1190	Right-handed 310
Helix 68	AH5	B	1191	1200	Right-handed alpha
Helix 69	AH6	B	1206	1219	Right-handed alpha
Helix 70	AH7	B	1262	1269	Right-handed alpha
Helix 71	AH8	B	1276	1294	Right-handed alpha
Helix 72	AH9	B	1297	1302	Right-handed alpha
Helix 73	AI1	B	1303	1311	Right-handed alpha
Helix 74	AI2	B	1311	1329	Right-handed alpha
Helix 75	AI3	B	1330	1348	Right-handed alpha
Helix 76	AI4	B	1350	1366	Right-handed alpha
Helix 77	AI5	B	1376	1378	Right-handed 310
Helix 78	AI6	B	1379	1390	Right-handed alpha
Helix 79	AI7	B	1392	1405	Right-handed alpha
Helix 80	AI8	B	1409	1423	Right-handed alpha
Helix 81	AI9	B	1425	1440	Right-handed alpha
Helix 82	AJ1	B	1514	1521	Right-handed alpha
Helix 83	AJ2	B	1529	1533	Right-handed alpha
Helix 84	AJ3	B	1540	1546	Right-handed alpha
Helix 85	AJ4	B	1547	1548	Right-handed 310
Helix 86	AJ5	B	1550	1553	Right-handed 310
Helix 87	AJ6	B	1556	1572	Right-handed alpha
Helix 88	AJ7	B	1572	1578	Right-handed alpha
Helix 89	AJ8	B	1586	1608	Right-handed alpha
Helix 90	AJ9	B	1608	1625	Right-handed alpha
Helix 91	AK1	B	1629	1641	Right-handed alpha
Helix 92	AK2	B	1649	1659	Right-handed alpha
Helix 93	AK3	B	1667	1678	Right-handed alpha
Helix 94	AK4	B	1693	1706	Right-handed alpha
Helix 95	AK5	B	1709	1728	Right-handed alpha
Helix 96	AK6	B	1729	1731	Right-handed 310
Helix 97	AK7	B	1736	1763	Right-handed alpha
Helix 98	AK8	B	1768	1783	Right-handed alpha
Helix 99	AK9	B	1786	1813	Right-handed alpha
Helix 100	AL1	B	1868	1894	Right-handed alpha
Helix 101	AL2	B	1899	1914	Right-handed alpha
Helix 102	AL3	B	1916	1929	Right-handed alpha
Helix 103	AL4	B	1930	1939	Right-handed 310
Helix 104	AL5	B	1950	1968	Right-handed alpha
Helix 105	AL6	B	1969	1971	Right-handed 310
Helix 106	AL7	B	1972	1980	Right-handed alpha
Helix 107	AL8	B	1984	2002	Right-handed alpha
Helix 108	AL9	B	2004	2021	Right-handed alpha
Helix 109	AM1	B	2022	2040	Right-handed alpha
Helix 110	AM2	B	2043	2060	Right-handed alpha
Helix 111	AM3	B	2064	2092	Right-handed alpha
Helix 112	AM4	B	2093	2115	Right-handed alpha
Helix 113	AM5	B	2116	2118	Right-handed 310
Helix 114	AM6	B	2123	2127	Right-handed alpha
Helix 115	AM7	B	2127	2132	Right-handed alpha
Helix 116	AM8	B	2192	2211	Right-handed alpha
Helix 117	AM9	B	2212	2218	Right-handed alpha
Helix 118	AN1	B	2246	2257	Right-handed alpha
Helix 119	AN2	B	2262	2272	Right-handed alpha
Helix 120	AN3	B	2274	2278	Right-handed 310
Helix 121	AN4	B	2279	2293	Right-handed alpha
Helix 122	AN5	B	2297	2306	Right-handed alpha
Helix 123	AN6	B	2309	2335	Right-handed alpha
Helix 124	AN7	B	2362	2367	Right-handed 310
Helix 125	AN8	B	2380	2385	Right-handed alpha
Helix 126	AN9	B	2394	2410	Right-handed alpha
Helix 127	AO1	B	2410	2423	Right-handed alpha
Helix 128	AO2	B	2428	2433	Right-handed alpha
Helix 129	AO3	B	2493	2509	Right-handed alpha
Helix 130	AO4	B	2520	2534	Right-handed alpha
Helix 131	AO5	B	2534	2539	Right-handed alpha
Helix 132	AO6	E	264	268	Right-handed 310
Helix 133	AO7	Y	20	25	Right-handed alpha
Helix 134	AO8	Y	30	35	Right-handed 310
Helix 135	AO9	Y	78	82	Right-handed 310
Helix 136	AP1	Y	89	93	Right-handed 310
Helix 137	AP2	Y	96	112	Right-handed alpha
Helix 138	AP3	Y	127	141	Right-handed alpha
Helix 139	AP4	Y	178	186	Right-handed alpha
Helix 140	AP5	Y	198	218	Right-handed alpha
Helix 141	AP6	Y	261	269	Right-handed alpha
Helix 142	AP7	Y	272	282	Right-handed alpha
Helix 143	AP8	Y	291	296	Right-handed alpha
Helix 144	AP9	Y	307	328	Right-handed alpha
Helix 145	AQ1	Y	329	338	Right-handed alpha
Helix 146	AQ2	Y	340	359	Right-handed alpha
Helix 147	AQ3	Y	377	399	Right-handed alpha
Helix 148	AQ4	Y	407	420	Right-handed alpha
Helix 149	AQ5	Y	421	423	Right-handed 310
Helix 150	AQ6	Y	432	440	Right-handed alpha
Helix 151	AQ7	Y	445	458	Right-handed alpha
Helix 152	AQ8	Y	460	471	Right-handed alpha
Helix 153	AQ9	Y	472	480	Right-handed alpha
Helix 154	AR1	Y	487	502	Right-handed alpha
Helix 155	AR2	Y	507	512	Right-handed alpha
Helix 156	AR3	Y	513	524	Right-handed alpha
Helix 157	AR4	Y	528	547	Right-handed alpha
Helix 158	AR5	Y	548	556	Right-handed alpha
Helix 159	AR6	Y	557	566	Right-handed alpha
Helix 160	AR7	Y	570	585	Right-handed alpha
Helix 161	AR8	Y	589	598	Right-handed alpha
Helix 162	AR9	Y	600	605	Right-handed alpha
Helix 163	AS1	Y	606	610	Right-handed 310
Helix 164	AS2	Y	612	631	Right-handed alpha
Helix 165	AS3	Y	632	633	Right-handed 310
Helix 166	AS4	Y	634	636	Right-handed 310
Helix 167	AS5	Y	637	651	Right-handed alpha
Helix 168	AS6	Y	652	654	Right-handed 310
Helix 169	AS7	Y	656	679	Right-handed alpha
Helix 170	AS8	Y	681	686	Right-handed alpha
Helix 171	AS9	Y	807	821	Right-handed alpha
Helix 172	AT1	Y	823	840	Right-handed alpha
Helix 173	AT2	Y	959	965	Right-handed alpha
Helix 174	AT3	Y	966	969	Right-handed 310
Helix 175	AT4	Y	975	979	Right-handed 310
Helix 176	AT5	Y	982	1008	Right-handed alpha

There are 18 sheets in PDB entry 8RCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2153	2156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2181	2188	anti-parallel
Strand 5	B	2234	2238	anti-parallel
Strand 6	B	2227	2231	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2243	2245	first strand
Strand 2	B	2344	2347	anti-parallel
Strand 3	B	2353	2355	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	39	first strand
Strand 2	E	23	28	anti-parallel
Strand 3	E	14	19	anti-parallel
Strand 4	E	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	50	first strand
Strand 2	E	56	60	anti-parallel
Strand 3	E	62	69	anti-parallel
Strand 4	E	81	87	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	93	first strand
Strand 2	E	99	102	anti-parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	123	126	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	136	first strand
Strand 2	E	142	147	anti-parallel
Strand 3	E	152	156	anti-parallel
Strand 4	E	162	165	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	176	first strand
Strand 2	E	187	189	anti-parallel
Strand 3	E	193	199	anti-parallel
Strand 4	E	210	217	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	228	first strand
Strand 2	E	234	238	anti-parallel
Strand 3	E	243	248	anti-parallel
Strand 4	E	254	259	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	279	first strand
Strand 2	E	284	287	anti-parallel
Strand 3	E	294	298	anti-parallel
Strand 4	E	306	308	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	118	123	first strand
Strand 2	Y	57	64	parallel
Strand 3	Y	145	150	parallel
Strand 4	Y	190	194	parallel
Strand 5	Y	240	244	parallel
Strand 6	Y	365	367	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1015	1021	first strand
Strand 2	Y	1324	1329	anti-parallel
Strand 3	Y	1316	1320	anti-parallel
Strand 4	Y	1304	1309	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1028	1031	first strand
Strand 2	Y	1037	1041	anti-parallel
Strand 3	Y	1045	1050	anti-parallel
Strand 4	Y	1056	1061	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1070	1075	first strand
Strand 2	Y	1084	1088	anti-parallel
Strand 3	Y	1092	1096	anti-parallel
Strand 4	Y	1108	1113	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1127	1132	first strand
Strand 2	Y	1137	1142	anti-parallel
Strand 3	Y	1147	1151	anti-parallel
Strand 4	Y	1157	1161	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1173	1175	first strand
Strand 2	Y	1180	1182	anti-parallel
Strand 3	Y	1192	1194	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1218	1219	first strand
Strand 2	Y	1227	1230	anti-parallel
Strand 3	Y	1236	1239	anti-parallel
Strand 4	Y	1246	1249	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1267	1268	first strand
Strand 2	Y	1280	1281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RCK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCK