Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RCN entry

There are 3 chains in PDB entry 8RCN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 775	TRP 2549
Y	ARG 54	PRO 394
X	GLU 111	ILE 118

There are109 helices in PDB entry 8RCN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	775	785	Right-handed alpha
Helix 2	AA2	B	792	810	Right-handed alpha
Helix 3	AA3	B	813	830	Right-handed alpha
Helix 4	AA4	B	831	834	Right-handed 310
Helix 5	AA5	B	836	851	Right-handed alpha
Helix 6	AA6	B	856	861	Right-handed alpha
Helix 7	AA7	B	863	875	Right-handed alpha
Helix 8	AA8	B	877	892	Right-handed alpha
Helix 9	AA9	B	895	903	Right-handed alpha
Helix 10	AB1	B	934	938	Right-handed alpha
Helix 11	AB2	B	939	941	Right-handed 310
Helix 12	AB3	B	942	961	Right-handed alpha
Helix 13	AB4	B	963	983	Right-handed alpha
Helix 14	AB5	B	984	988	Right-handed 310
Helix 15	AB6	B	989	1004	Right-handed alpha
Helix 16	AB7	B	1005	1024	Right-handed alpha
Helix 17	AB8	B	1027	1031	Right-handed 310
Helix 18	AB9	B	1032	1042	Right-handed alpha
Helix 19	AC1	B	1045	1063	Right-handed alpha
Helix 20	AC2	B	1064	1073	Right-handed 310
Helix 21	AC3	B	1074	1082	Right-handed alpha
Helix 22	AC4	B	1087	1089	Right-handed 310
Helix 23	AC5	B	1090	1102	Right-handed alpha
Helix 24	AC6	B	1103	1108	Right-handed 310
Helix 25	AC7	B	1110	1124	Right-handed alpha
Helix 26	AC8	B	1128	1143	Right-handed alpha
Helix 27	AC9	B	1148	1150	Right-handed 310
Helix 28	AD1	B	1151	1166	Right-handed alpha
Helix 29	AD2	B	1166	1185	Right-handed alpha
Helix 30	AD3	B	1186	1190	Right-handed 310
Helix 31	AD4	B	1191	1202	Right-handed alpha
Helix 32	AD5	B	1206	1218	Right-handed alpha
Helix 33	AD6	B	1262	1267	Right-handed alpha
Helix 34	AD7	B	1268	1274	Right-handed 310
Helix 35	AD8	B	1276	1294	Right-handed alpha
Helix 36	AD9	B	1297	1302	Right-handed alpha
Helix 37	AE1	B	1303	1308	Right-handed alpha
Helix 38	AE2	B	1310	1317	Right-handed alpha
Helix 39	AE3	B	1317	1328	Right-handed alpha
Helix 40	AE4	B	1330	1348	Right-handed alpha
Helix 41	AE5	B	1350	1366	Right-handed alpha
Helix 42	AE6	B	1376	1378	Right-handed 310
Helix 43	AE7	B	1379	1390	Right-handed alpha
Helix 44	AE8	B	1392	1405	Right-handed alpha
Helix 45	AE9	B	1409	1423	Right-handed alpha
Helix 46	AF1	B	1425	1440	Right-handed alpha
Helix 47	AF2	B	1514	1523	Right-handed alpha
Helix 48	AF3	B	1529	1536	Right-handed alpha
Helix 49	AF4	B	1540	1548	Right-handed alpha
Helix 50	AF5	B	1551	1555	Right-handed alpha
Helix 51	AF6	B	1556	1579	Right-handed alpha
Helix 52	AF7	B	1581	1608	Right-handed alpha
Helix 53	AF8	B	1610	1626	Right-handed alpha
Helix 54	AF9	B	1629	1641	Right-handed alpha
Helix 55	AG1	B	1645	1648	Right-handed 310
Helix 56	AG2	B	1649	1660	Right-handed alpha
Helix 57	AG3	B	1661	1678	Right-handed alpha
Helix 58	AG4	B	1693	1706	Right-handed alpha
Helix 59	AG5	B	1709	1731	Right-handed alpha
Helix 60	AG6	B	1736	1763	Right-handed alpha
Helix 61	AG7	B	1768	1783	Right-handed alpha
Helix 62	AG8	B	1786	1811	Right-handed alpha
Helix 63	AG9	B	1868	1894	Right-handed alpha
Helix 64	AH1	B	1899	1914	Right-handed alpha
Helix 65	AH2	B	1916	1930	Right-handed alpha
Helix 66	AH3	B	1931	1937	Right-handed 310
Helix 67	AH4	B	1938	1945	Right-handed alpha
Helix 68	AH5	B	1950	1966	Right-handed alpha
Helix 69	AH6	B	1967	1972	Right-handed 310
Helix 70	AH7	B	1974	1979	Right-handed alpha
Helix 71	AH8	B	1980	1982	Right-handed 310
Helix 72	AH9	B	1984	2002	Right-handed alpha
Helix 73	AI1	B	2002	2021	Right-handed alpha
Helix 74	AI2	B	2022	2040	Right-handed alpha
Helix 75	AI3	B	2043	2050	Right-handed alpha
Helix 76	AI4	B	2051	2058	Right-handed alpha
Helix 77	AI5	B	2064	2092	Right-handed alpha
Helix 78	AI6	B	2095	2113	Right-handed alpha
Helix 79	AI7	B	2124	2126	Right-handed 310
Helix 80	AI8	B	2127	2132	Right-handed alpha
Helix 81	AI9	B	2192	2212	Right-handed alpha
Helix 82	AJ1	B	2212	2219	Right-handed alpha
Helix 83	AJ2	B	2246	2257	Right-handed alpha
Helix 84	AJ3	B	2262	2272	Right-handed alpha
Helix 85	AJ4	B	2274	2278	Right-handed 310
Helix 86	AJ5	B	2279	2293	Right-handed alpha
Helix 87	AJ6	B	2297	2306	Right-handed alpha
Helix 88	AJ7	B	2309	2335	Right-handed alpha
Helix 89	AJ8	B	2362	2367	Right-handed 310
Helix 90	AJ9	B	2380	2385	Right-handed alpha
Helix 91	AK1	B	2394	2410	Right-handed alpha
Helix 92	AK2	B	2410	2423	Right-handed alpha
Helix 93	AK3	B	2424	2436	Right-handed alpha
Helix 94	AK4	B	2493	2510	Right-handed alpha
Helix 95	AK5	B	2520	2533	Right-handed alpha
Helix 96	AK6	B	2534	2540	Right-handed alpha
Helix 97	AK7	Y	89	93	Right-handed 310
Helix 98	AK8	Y	94	114	Right-handed alpha
Helix 99	AK9	Y	126	140	Right-handed alpha
Helix 100	AL1	Y	178	186	Right-handed alpha
Helix 101	AL2	Y	198	218	Right-handed alpha
Helix 102	AL3	Y	261	269	Right-handed alpha
Helix 103	AL4	Y	269	282	Right-handed alpha
Helix 104	AL5	Y	291	296	Right-handed alpha
Helix 105	AL6	Y	307	328	Right-handed alpha
Helix 106	AL7	Y	329	338	Right-handed alpha
Helix 107	AL8	Y	340	358	Right-handed alpha
Helix 108	AL9	Y	359	361	Right-handed 310
Helix 109	AM1	Y	377	392	Right-handed alpha

There are 4 sheets in PDB entry 8RCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2153	2156	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2176	anti-parallel
Strand 4	B	2181	2188	anti-parallel
Strand 5	B	2234	2238	anti-parallel
Strand 6	B	2227	2231	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2243	2245	first strand
Strand 2	B	2344	2347	anti-parallel
Strand 3	B	2353	2355	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	119	122	first strand
Strand 2	Y	57	63	parallel
Strand 3	Y	145	150	parallel
Strand 4	Y	190	194	parallel
Strand 5	Y	241	244	parallel
Strand 6	Y	365	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RCN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RCN