Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RD2 entry

There are 2 chains in PDB entry 8RD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 29LEU 435
B
 GLU 29LEU 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8RD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 44Right-handed 310
Helix 2
AA2
A
47 63Right-handed alpha
Helix 3
AA3
A
63 90Right-handed alpha
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
100 146Right-handed alpha
Helix 6
AA6
A
167 172Right-handed 310
Helix 7
AA7
A
190 194Right-handed 310
Helix 8
AA8
A
198 202Right-handed 310
Helix 9
AA9
A
204 219Right-handed alpha
Helix 10
AB1
A
251 285Right-handed alpha
Helix 11
AB2
A
291 356Right-handed alpha
Helix 12
AB3
A
361 434Right-handed alpha
Helix 13
AB4
B
40 44Right-handed 310
Helix 14
AB5
B
47 63Right-handed alpha
Helix 15
AB6
B
63 92Right-handed alpha
Helix 16
AB7
B
92 97Right-handed alpha
Helix 17
AB8
B
100 146Right-handed alpha
Helix 18
AB9
B
167 172Right-handed 310
Helix 19
AC1
B
190 194Right-handed 310
Helix 20
AC2
B
198 202Right-handed 310
Helix 21
AC3
B
204 219Right-handed alpha
Helix 22
AC4
B
235 239Right-handed 310
Helix 23
AC5
B
252 285Right-handed alpha
Helix 24
AC6
B
295 355Right-handed alpha
Helix 25
AC7
B
363 419Right-handed alpha
Helix 26
AC8
B
420 433Right-handed alpha
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There are no sheets in PDB entry 8RD2
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