Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RD3 entry

There are 3 chains in PDB entry 8RD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 224ARG 851
B
 GLY 0ASP 26
B
 THR 28PRO 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8RD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
234 261Right-handed alpha
Helix 2
AA2
A
287 291Right-handed 310
Helix 3
AA3
A
355 371Right-handed alpha
Helix 4
AA4
A
376 385Right-handed alpha
Helix 5
AA5
A
410 421Right-handed alpha
Helix 6
AA6
A
435 452Right-handed alpha
Helix 7
AA7
A
461 475Right-handed alpha
Helix 8
AA8
A
484 488Right-handed 310
Helix 9
AA9
A
494 497Right-handed 310
Helix 10
AB1
A
498 506Right-handed alpha
Helix 11
AB2
A
509 522Right-handed alpha
Helix 12
AB3
A
525 547Right-handed alpha
Helix 13
AB4
A
555 563Right-handed 310
Helix 14
AB5
A
573 577Right-handed 310
Helix 15
AB6
A
578 587Right-handed alpha
Helix 16
AB7
A
608 615Right-handed alpha
Helix 17
AB8
A
619 627Right-handed alpha
Helix 18
AB9
A
641 653Right-handed alpha
Helix 19
AC1
A
702 719Right-handed alpha
Helix 20
AC2
A
722 724Right-handed 310
Helix 21
AC3
A
732 747Right-handed alpha
Helix 22
AC4
A
750 756Right-handed alpha
Helix 23
AC5
A
761 766Right-handed alpha
Helix 24
AC6
A
786 790Right-handed 310
Helix 25
AC7
A
791 800Right-handed alpha
Helix 26
AC8
A
811 816Right-handed alpha
Helix 27
AC9
A
818 831Right-handed alpha
Helix 28
AD1
B
9 26Right-handed alpha
Helix 29
AD2
B
38 52Right-handed alpha
Helix 30
AD3
B
54 70Right-handed alpha
Helix 31
AD4
B
83 88Right-handed alpha
Helix 32
AD5
B
89 97Right-handed alpha
Helix 33
AD6
B
104 108Right-handed 310
Helix 34
AD7
B
109 125Right-handed alpha
Helix 35
AD8
B
139 149Right-handed alpha
Helix 36
AD9
B
155 168Right-handed alpha
Helix 37
AE1
B
169 185Right-handed alpha
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There are 7 sheets in PDB entry 8RD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 271first strand
Strand 2
A
277 281anti-parallel
Strand 3
A
328 332anti-parallel
Strand 4
A
311 319anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
347 351anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 393first strand
Strand 2
B
196 200parallel
Strand 3
B
187 190anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
549 553parallel
Strand 3
A
455 459parallel
Strand 4
A
568 571parallel
Strand 5
A
592 597parallel
Strand 6
A
425 429parallel
Strand 7
A
632 633parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 637first strand
Strand 2
A
658 659parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 760first strand
Strand 2
A
726 729parallel
Strand 3
A
770 776parallel
Strand 4
A
802 810parallel
Strand 5
A
682 686parallel
Strand 6
A
834 838parallel
Strand 7
A
841 844anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 693first strand
Strand 2
A
700 701anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
31 37parallel
Strand 3
B
2 8parallel
Strand 4
B
133 136parallel
Strand 5
B
153 154parallel
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