Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RD4 entry

There are 6 chains in PDB entry 8RD4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 7	MET 4128
D	PRO 11	LEU 196
E	LYS 31	ASP 609
F	ASN 6	HIS 558
X	G 19	C 59
Y	G 215	C 255

There are255 helices in PDB entry 8RD4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	16	Right-handed alpha
Helix 2	AA2	A	17	21	Right-handed 310
Helix 3	AA3	A	27	41	Right-handed alpha
Helix 4	AA4	A	42	44	Right-handed 310
Helix 5	AA5	A	50	59	Right-handed alpha
Helix 6	AA6	A	76	92	Right-handed alpha
Helix 7	AA7	A	103	116	Right-handed alpha
Helix 8	AA8	A	146	153	Right-handed alpha
Helix 9	AA9	A	167	171	Right-handed 310
Helix 10	AB1	A	172	181	Right-handed alpha
Helix 11	AB2	A	182	184	Right-handed 310
Helix 12	AB3	A	185	190	Right-handed alpha
Helix 13	AB4	A	194	204	Right-handed alpha
Helix 14	AB5	A	216	228	Right-handed alpha
Helix 15	AB6	A	243	257	Right-handed alpha
Helix 16	AB7	A	266	278	Right-handed alpha
Helix 17	AB8	A	289	302	Right-handed alpha
Helix 18	AB9	A	305	329	Right-handed alpha
Helix 19	AC1	A	334	350	Right-handed alpha
Helix 20	AC2	A	355	371	Right-handed alpha
Helix 21	AC3	A	372	374	Right-handed 310
Helix 22	AC4	A	379	384	Right-handed alpha
Helix 23	AC5	A	386	397	Right-handed alpha
Helix 24	AC6	A	409	423	Right-handed alpha
Helix 25	AC7	A	431	446	Right-handed alpha
Helix 26	AC8	A	447	449	Right-handed 310
Helix 27	AC9	A	455	469	Right-handed alpha
Helix 28	AD1	A	476	492	Right-handed alpha
Helix 29	AD2	A	523	533	Right-handed alpha
Helix 30	AD3	A	561	579	Right-handed alpha
Helix 31	AD4	A	616	632	Right-handed alpha
Helix 32	AD5	A	645	660	Right-handed alpha
Helix 33	AD6	A	665	680	Right-handed alpha
Helix 34	AD7	A	701	718	Right-handed alpha
Helix 35	AD8	A	722	734	Right-handed alpha
Helix 36	AD9	A	744	747	Right-handed 310
Helix 37	AE1	A	748	758	Right-handed alpha
Helix 38	AE2	A	762	780	Right-handed alpha
Helix 39	AE3	A	785	789	Right-handed 310
Helix 40	AE4	A	792	801	Right-handed 310
Helix 41	AE5	A	818	822	Right-handed alpha
Helix 42	AE6	A	827	835	Right-handed 310
Helix 43	AE7	A	847	863	Right-handed alpha
Helix 44	AE8	A	868	873	Right-handed alpha
Helix 45	AE9	A	878	883	Right-handed alpha
Helix 46	AF1	A	910	920	Right-handed alpha
Helix 47	AF2	A	923	946	Right-handed alpha
Helix 48	AF3	A	958	973	Right-handed alpha
Helix 49	AF4	A	977	983	Right-handed alpha
Helix 50	AF5	A	984	996	Right-handed alpha
Helix 51	AF6	A	1003	1018	Right-handed alpha
Helix 52	AF7	A	1022	1043	Right-handed alpha
Helix 53	AF8	A	1045	1049	Right-handed 310
Helix 54	AF9	A	1055	1068	Right-handed alpha
Helix 55	AG1	A	1071	1086	Right-handed alpha
Helix 56	AG2	A	1095	1114	Right-handed alpha
Helix 57	AG3	A	1118	1121	Right-handed 310
Helix 58	AG4	A	1122	1142	Right-handed alpha
Helix 59	AG5	A	1164	1175	Right-handed alpha
Helix 60	AG6	A	1180	1195	Right-handed alpha
Helix 61	AG7	A	1196	1198	Right-handed 310
Helix 62	AG8	A	1203	1216	Right-handed alpha
Helix 63	AG9	A	1217	1222	Right-handed alpha
Helix 64	AH1	A	1223	1226	Right-handed 310
Helix 65	AH2	A	1249	1272	Right-handed alpha
Helix 66	AH3	A	1277	1281	Right-handed 310
Helix 67	AH4	A	1293	1300	Right-handed alpha
Helix 68	AH5	A	1301	1303	Right-handed 310
Helix 69	AH6	A	1325	1352	Right-handed alpha
Helix 70	AH7	A	1353	1357	Right-handed 310
Helix 71	AH8	A	1367	1377	Right-handed alpha
Helix 72	AH9	A	1388	1393	Right-handed alpha
Helix 73	AI1	A	1394	1409	Right-handed alpha
Helix 74	AI2	A	1411	1421	Right-handed alpha
Helix 75	AI3	A	1424	1432	Right-handed alpha
Helix 76	AI4	A	1444	1461	Right-handed alpha
Helix 77	AI5	A	1477	1492	Right-handed alpha
Helix 78	AI6	A	1504	1521	Right-handed alpha
Helix 79	AI7	A	1524	1534	Right-handed alpha
Helix 80	AI8	A	1557	1563	Right-handed alpha
Helix 81	AI9	A	1565	1574	Right-handed alpha
Helix 82	AJ1	A	1577	1585	Right-handed alpha
Helix 83	AJ2	A	1589	1607	Right-handed alpha
Helix 84	AJ3	A	1613	1624	Right-handed alpha
Helix 85	AJ4	A	1626	1630	Right-handed 310
Helix 86	AJ5	A	1641	1654	Right-handed alpha
Helix 87	AJ6	A	1667	1679	Right-handed alpha
Helix 88	AJ7	A	1685	1693	Right-handed alpha
Helix 89	AJ8	A	1694	1700	Right-handed 310
Helix 90	AJ9	A	1705	1721	Right-handed alpha
Helix 91	AK1	A	1733	1753	Right-handed alpha
Helix 92	AK2	A	1755	1767	Right-handed alpha
Helix 93	AK3	A	1776	1786	Right-handed alpha
Helix 94	AK4	A	1790	1807	Right-handed alpha
Helix 95	AK5	A	1813	1822	Right-handed alpha
Helix 96	AK6	A	1823	1831	Right-handed alpha
Helix 97	AK7	A	1833	1835	Right-handed 310
Helix 98	AK8	A	1836	1842	Right-handed alpha
Helix 99	AK9	A	1843	1853	Right-handed alpha
Helix 100	AL1	A	1859	1884	Right-handed alpha
Helix 101	AL2	A	1894	1899	Right-handed alpha
Helix 102	AL3	A	1911	1922	Right-handed alpha
Helix 103	AL4	A	1934	1955	Right-handed alpha
Helix 104	AL5	A	1970	1974	Right-handed 310
Helix 105	AL6	A	1977	1982	Right-handed alpha
Helix 106	AL7	A	2087	2091	Right-handed 310
Helix 107	AL8	A	2093	2106	Right-handed alpha
Helix 108	AL9	A	2127	2135	Right-handed alpha
Helix 109	AM1	A	2139	2153	Right-handed alpha
Helix 110	AM2	A	2153	2158	Right-handed alpha
Helix 111	AM3	A	2164	2174	Right-handed alpha
Helix 112	AM4	A	2182	2194	Right-handed alpha
Helix 113	AM5	A	2195	2197	Right-handed 310
Helix 114	AM6	A	2205	2222	Right-handed alpha
Helix 115	AM7	A	2227	2245	Right-handed alpha
Helix 116	AM8	A	2252	2261	Right-handed alpha
Helix 117	AM9	A	2268	2283	Right-handed alpha
Helix 118	AN1	A	2295	2305	Right-handed alpha
Helix 119	AN2	A	2306	2309	Right-handed 310
Helix 120	AN3	A	2312	2333	Right-handed alpha
Helix 121	AN4	A	2337	2351	Right-handed alpha
Helix 122	AN5	A	2357	2369	Right-handed alpha
Helix 123	AN6	A	2378	2386	Right-handed alpha
Helix 124	AN7	A	2387	2389	Right-handed 310
Helix 125	AN8	A	2391	2404	Right-handed alpha
Helix 126	AN9	A	2410	2418	Right-handed alpha
Helix 127	AO1	A	2419	2426	Right-handed alpha
Helix 128	AO2	A	2428	2443	Right-handed alpha
Helix 129	AO3	A	2444	2446	Right-handed 310
Helix 130	AO4	A	2447	2460	Right-handed alpha
Helix 131	AO5	A	2466	2484	Right-handed alpha
Helix 132	AO6	A	2494	2509	Right-handed alpha
Helix 133	AO7	A	2510	2512	Right-handed 310
Helix 134	AO8	A	2514	2527	Right-handed alpha
Helix 135	AO9	A	2534	2543	Right-handed alpha
Helix 136	AP1	A	2544	2546	Right-handed 310
Helix 137	AP2	A	2553	2565	Right-handed alpha
Helix 138	AP3	A	2566	2568	Right-handed 310
Helix 139	AP4	A	2787	2799	Right-handed alpha
Helix 140	AP5	A	2801	2821	Right-handed alpha
Helix 141	AP6	A	2825	2847	Right-handed alpha
Helix 142	AP7	A	2851	2864	Right-handed alpha
Helix 143	AP8	A	2872	2884	Right-handed alpha
Helix 144	AP9	A	2885	2897	Right-handed alpha
Helix 145	AQ1	A	2919	2933	Right-handed alpha
Helix 146	AQ2	A	2935	2946	Right-handed alpha
Helix 147	AQ3	A	2951	2962	Right-handed alpha
Helix 148	AQ4	A	2966	2977	Right-handed alpha
Helix 149	AQ5	A	2987	3005	Right-handed alpha
Helix 150	AQ6	A	3007	3017	Right-handed alpha
Helix 151	AQ7	A	3034	3055	Right-handed alpha
Helix 152	AQ8	A	3060	3069	Right-handed alpha
Helix 153	AQ9	A	3075	3081	Right-handed alpha
Helix 154	AR1	A	3083	3093	Right-handed alpha
Helix 155	AR2	A	3095	3117	Right-handed alpha
Helix 156	AR3	A	3124	3130	Right-handed alpha
Helix 157	AR4	A	3131	3147	Right-handed alpha
Helix 158	AR5	A	3147	3152	Right-handed alpha
Helix 159	AR6	A	3154	3167	Right-handed alpha
Helix 160	AR7	A	3175	3194	Right-handed alpha
Helix 161	AR8	A	3230	3249	Right-handed alpha
Helix 162	AR9	A	3253	3263	Right-handed alpha
Helix 163	AS1	A	3264	3267	Right-handed 310
Helix 164	AS2	A	3272	3290	Right-handed alpha
Helix 165	AS3	A	3292	3299	Right-handed alpha
Helix 166	AS4	A	3300	3309	Right-handed alpha
Helix 167	AS5	A	3314	3318	Right-handed 310
Helix 168	AS6	A	3321	3344	Right-handed alpha
Helix 169	AS7	A	3352	3360	Right-handed alpha
Helix 170	AS8	A	3371	3391	Right-handed alpha
Helix 171	AS9	A	3409	3428	Right-handed alpha
Helix 172	AT1	A	3441	3457	Right-handed alpha
Helix 173	AT2	A	3458	3463	Right-handed alpha
Helix 174	AT3	A	3465	3475	Right-handed alpha
Helix 175	AT4	A	3479	3487	Right-handed alpha
Helix 176	AT5	A	3491	3497	Right-handed 310
Helix 177	AT6	A	3498	3506	Right-handed alpha
Helix 178	AT7	A	3510	3514	Right-handed 310
Helix 179	AT8	A	3515	3525	Right-handed alpha
Helix 180	AT9	A	3529	3539	Right-handed alpha
Helix 181	AU1	A	3545	3550	Right-handed alpha
Helix 182	AU2	A	3551	3562	Right-handed alpha
Helix 183	AU3	A	3567	3579	Right-handed alpha
Helix 184	AU4	A	3580	3599	Right-handed alpha
Helix 185	AU5	A	3605	3615	Right-handed alpha
Helix 186	AU6	A	3632	3640	Right-handed alpha
Helix 187	AU7	A	3644	3649	Right-handed alpha
Helix 188	AU8	A	3660	3662	Right-handed 310
Helix 189	AU9	A	3663	3672	Right-handed alpha
Helix 190	AV1	A	3680	3683	Right-handed 310
Helix 191	AV2	A	3684	3689	Right-handed alpha
Helix 192	AV3	A	3758	3776	Right-handed alpha
Helix 193	AV4	A	3778	3784	Right-handed alpha
Helix 194	AV5	A	3812	3820	Right-handed alpha
Helix 195	AV6	A	3821	3830	Right-handed alpha
Helix 196	AV7	A	3834	3848	Right-handed alpha
Helix 197	AV8	A	3854	3859	Right-handed alpha
Helix 198	AV9	A	3860	3862	Right-handed 310
Helix 199	AW1	A	3863	3876	Right-handed alpha
Helix 200	AW2	A	3881	3889	Right-handed alpha
Helix 201	AW3	A	3896	3918	Right-handed alpha
Helix 202	AW4	A	3964	3969	Right-handed alpha
Helix 203	AW5	A	3970	3972	Right-handed 310
Helix 204	AW6	A	3979	3994	Right-handed alpha
Helix 205	AW7	A	3996	4007	Right-handed alpha
Helix 206	AW8	A	4015	4022	Right-handed alpha
Helix 207	AW9	A	4032	4039	Right-handed 310
Helix 208	AX1	A	4041	4053	Right-handed alpha
Helix 209	AX2	A	4055	4068	Right-handed alpha
Helix 210	AX3	A	4073	4083	Right-handed alpha
Helix 211	AX4	A	4088	4092	Right-handed 310
Helix 212	AX5	A	4099	4112	Right-handed alpha
Helix 213	AX6	A	4113	4119	Right-handed alpha
Helix 214	AX7	A	4120	4125	Right-handed 310
Helix 215	AX8	D	36	49	Right-handed alpha
Helix 216	AX9	D	69	76	Right-handed alpha
Helix 217	AY1	D	81	91	Right-handed alpha
Helix 218	AY2	D	95	100	Right-handed 310
Helix 219	AY3	D	137	146	Right-handed alpha
Helix 220	AY4	D	154	158	Right-handed 310
Helix 221	AY5	E	45	50	Right-handed alpha
Helix 222	AY6	E	58	77	Right-handed alpha
Helix 223	AY7	E	112	118	Right-handed alpha
Helix 224	AY8	E	119	122	Right-handed 310
Helix 225	AY9	E	123	135	Right-handed alpha
Helix 226	AZ1	E	144	156	Right-handed alpha
Helix 227	AZ2	E	179	197	Right-handed alpha
Helix 228	AZ3	E	239	243	Right-handed 310
Helix 229	AZ4	E	330	337	Right-handed alpha
Helix 230	AZ5	E	354	356	Right-handed 310
Helix 231	AZ6	E	377	392	Right-handed alpha
Helix 232	AZ7	E	439	443	Right-handed 310
Helix 233	AZ8	E	458	468	Right-handed alpha
Helix 234	AZ9	E	480	495	Right-handed alpha
Helix 235	BA1	E	510	519	Right-handed alpha
Helix 236	BA2	E	520	530	Right-handed alpha
Helix 237	BA3	E	560	571	Right-handed alpha
Helix 238	BA4	E	577	589	Right-handed alpha
Helix 239	BA5	E	595	609	Right-handed alpha
Helix 240	BA6	F	17	22	Right-handed alpha
Helix 241	BA7	F	29	48	Right-handed alpha
Helix 242	BA8	F	87	95	Right-handed alpha
Helix 243	BA9	F	106	122	Right-handed alpha
Helix 244	BB1	F	200	216	Right-handed alpha
Helix 245	BB2	F	217	224	Right-handed 310
Helix 246	BB3	F	227	231	Right-handed alpha
Helix 247	BB4	F	306	308	Right-handed 310
Helix 248	BB5	F	324	331	Right-handed alpha
Helix 249	BB6	F	372	387	Right-handed alpha
Helix 250	BB7	F	447	461	Right-handed alpha
Helix 251	BB8	F	466	470	Right-handed 310
Helix 252	BB9	F	484	500	Right-handed alpha
Helix 253	BC1	F	509	516	Right-handed alpha
Helix 254	BC2	F	519	526	Right-handed alpha
Helix 255	BC3	F	526	537	Right-handed alpha

There are 15 sheets in PDB entry 8RD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	893	895	first strand
Strand 2	A	904	906	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3727	3728	first strand
Strand 2	A	3736	3738	anti-parallel
Strand 3	A	3750	3754	anti-parallel
Strand 4	A	3800	3804	anti-parallel
Strand 5	A	3793	3797	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3741	3742	first strand
Strand 2	A	3746	3747	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3810	3811	first strand
Strand 2	A	3928	3930	anti-parallel
Strand 3	A	3937	3939	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	30	32	parallel
Strand 3	D	62	65	parallel
Strand 4	D	79	80	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	104	first strand
Strand 2	E	82	88	anti-parallel
Strand 3	E	35	42	parallel
Strand 4	E	161	169	parallel
Strand 5	E	199	201	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	262	first strand
Strand 2	E	268	275	anti-parallel
Strand 3	E	366	370	anti-parallel
Strand 4	E	431	433	anti-parallel
Strand 5	E	409	416	anti-parallel
Strand 6	E	394	401	anti-parallel
Strand 7	E	344	352	anti-parallel
Strand 8	E	258	262	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	289	first strand
Strand 2	F	310	311	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	303	first strand
Strand 2	F	290	293	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	329	first strand
Strand 2	E	316	322	anti-parallel
Strand 3	F	277	280	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	420	first strand
Strand 2	E	426	428	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	53	59	anti-parallel
Strand 3	F	9	15	parallel
Strand 4	F	130	135	parallel
Strand 5	F	161	165	parallel
Strand 6	F	225	226	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	253	first strand
Strand 2	F	257	268	anti-parallel
Strand 3	F	357	364	anti-parallel
Strand 4	F	417	423	anti-parallel
Strand 5	F	404	412	anti-parallel
Strand 6	F	390	396	anti-parallel
Strand 7	F	339	346	anti-parallel
Strand 8	F	248	253	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	316	first strand
Strand 2	F	319	321	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	464	465	first strand
Strand 2	F	474	475	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RD4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD4