Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RD4 entry

There are 6 chains in PDB entry 8RD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 7MET 4128
D
PRO 11LEU 196
E
LYS 31ASP 609
F
ASN 6HIS 558
X
G 19 C 59
Y
G 215 C 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are255 helices in PDB entry 8RD4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
17 21Right-handed 310
Helix 3
AA3
A
27 41Right-handed alpha
Helix 4
AA4
A
42 44Right-handed 310
Helix 5
AA5
A
50 59Right-handed alpha
Helix 6
AA6
A
76 92Right-handed alpha
Helix 7
AA7
A
103 116Right-handed alpha
Helix 8
AA8
A
146 153Right-handed alpha
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
172 181Right-handed alpha
Helix 11
AB2
A
182 184Right-handed 310
Helix 12
AB3
A
185 190Right-handed alpha
Helix 13
AB4
A
194 204Right-handed alpha
Helix 14
AB5
A
216 228Right-handed alpha
Helix 15
AB6
A
243 257Right-handed alpha
Helix 16
AB7
A
266 278Right-handed alpha
Helix 17
AB8
A
289 302Right-handed alpha
Helix 18
AB9
A
305 329Right-handed alpha
Helix 19
AC1
A
334 350Right-handed alpha
Helix 20
AC2
A
355 371Right-handed alpha
Helix 21
AC3
A
372 374Right-handed 310
Helix 22
AC4
A
379 384Right-handed alpha
Helix 23
AC5
A
386 397Right-handed alpha
Helix 24
AC6
A
409 423Right-handed alpha
Helix 25
AC7
A
431 446Right-handed alpha
Helix 26
AC8
A
447 449Right-handed 310
Helix 27
AC9
A
455 469Right-handed alpha
Helix 28
AD1
A
476 492Right-handed alpha
Helix 29
AD2
A
523 533Right-handed alpha
Helix 30
AD3
A
561 579Right-handed alpha
Helix 31
AD4
A
616 632Right-handed alpha
Helix 32
AD5
A
645 660Right-handed alpha
Helix 33
AD6
A
665 680Right-handed alpha
Helix 34
AD7
A
701 718Right-handed alpha
Helix 35
AD8
A
722 734Right-handed alpha
Helix 36
AD9
A
744 747Right-handed 310
Helix 37
AE1
A
748 758Right-handed alpha
Helix 38
AE2
A
762 780Right-handed alpha
Helix 39
AE3
A
785 789Right-handed 310
Helix 40
AE4
A
792 801Right-handed 310
Helix 41
AE5
A
818 822Right-handed alpha
Helix 42
AE6
A
827 835Right-handed 310
Helix 43
AE7
A
847 863Right-handed alpha
Helix 44
AE8
A
868 873Right-handed alpha
Helix 45
AE9
A
878 883Right-handed alpha
Helix 46
AF1
A
910 920Right-handed alpha
Helix 47
AF2
A
923 946Right-handed alpha
Helix 48
AF3
A
958 973Right-handed alpha
Helix 49
AF4
A
977 983Right-handed alpha
Helix 50
AF5
A
984 996Right-handed alpha
Helix 51
AF6
A
1003 1018Right-handed alpha
Helix 52
AF7
A
1022 1043Right-handed alpha
Helix 53
AF8
A
1045 1049Right-handed 310
Helix 54
AF9
A
1055 1068Right-handed alpha
Helix 55
AG1
A
1071 1086Right-handed alpha
Helix 56
AG2
A
1095 1114Right-handed alpha
Helix 57
AG3
A
1118 1121Right-handed 310
Helix 58
AG4
A
1122 1142Right-handed alpha
Helix 59
AG5
A
1164 1175Right-handed alpha
Helix 60
AG6
A
1180 1195Right-handed alpha
Helix 61
AG7
A
1196 1198Right-handed 310
Helix 62
AG8
A
1203 1216Right-handed alpha
Helix 63
AG9
A
1217 1222Right-handed alpha
Helix 64
AH1
A
1223 1226Right-handed 310
Helix 65
AH2
A
1249 1272Right-handed alpha
Helix 66
AH3
A
1277 1281Right-handed 310
Helix 67
AH4
A
1293 1300Right-handed alpha
Helix 68
AH5
A
1301 1303Right-handed 310
Helix 69
AH6
A
1325 1352Right-handed alpha
Helix 70
AH7
A
1353 1357Right-handed 310
Helix 71
AH8
A
1367 1377Right-handed alpha
Helix 72
AH9
A
1388 1393Right-handed alpha
Helix 73
AI1
A
1394 1409Right-handed alpha
Helix 74
AI2
A
1411 1421Right-handed alpha
Helix 75
AI3
A
1424 1432Right-handed alpha
Helix 76
AI4
A
1444 1461Right-handed alpha
Helix 77
AI5
A
1477 1492Right-handed alpha
Helix 78
AI6
A
1504 1521Right-handed alpha
Helix 79
AI7
A
1524 1534Right-handed alpha
Helix 80
AI8
A
1557 1563Right-handed alpha
Helix 81
AI9
A
1565 1574Right-handed alpha
Helix 82
AJ1
A
1577 1585Right-handed alpha
Helix 83
AJ2
A
1589 1607Right-handed alpha
Helix 84
AJ3
A
1613 1624Right-handed alpha
Helix 85
AJ4
A
1626 1630Right-handed 310
Helix 86
AJ5
A
1641 1654Right-handed alpha
Helix 87
AJ6
A
1667 1679Right-handed alpha
Helix 88
AJ7
A
1685 1693Right-handed alpha
Helix 89
AJ8
A
1694 1700Right-handed 310
Helix 90
AJ9
A
1705 1721Right-handed alpha
Helix 91
AK1
A
1733 1753Right-handed alpha
Helix 92
AK2
A
1755 1767Right-handed alpha
Helix 93
AK3
A
1776 1786Right-handed alpha
Helix 94
AK4
A
1790 1807Right-handed alpha
Helix 95
AK5
A
1813 1822Right-handed alpha
Helix 96
AK6
A
1823 1831Right-handed alpha
Helix 97
AK7
A
1833 1835Right-handed 310
Helix 98
AK8
A
1836 1842Right-handed alpha
Helix 99
AK9
A
1843 1853Right-handed alpha
Helix 100
AL1
A
1859 1884Right-handed alpha
Helix 101
AL2
A
1894 1899Right-handed alpha
Helix 102
AL3
A
1911 1922Right-handed alpha
Helix 103
AL4
A
1934 1955Right-handed alpha
Helix 104
AL5
A
1970 1974Right-handed 310
Helix 105
AL6
A
1977 1982Right-handed alpha
Helix 106
AL7
A
2087 2091Right-handed 310
Helix 107
AL8
A
2093 2106Right-handed alpha
Helix 108
AL9
A
2127 2135Right-handed alpha
Helix 109
AM1
A
2139 2153Right-handed alpha
Helix 110
AM2
A
2153 2158Right-handed alpha
Helix 111
AM3
A
2164 2174Right-handed alpha
Helix 112
AM4
A
2182 2194Right-handed alpha
Helix 113
AM5
A
2195 2197Right-handed 310
Helix 114
AM6
A
2205 2222Right-handed alpha
Helix 115
AM7
A
2227 2245Right-handed alpha
Helix 116
AM8
A
2252 2261Right-handed alpha
Helix 117
AM9
A
2268 2283Right-handed alpha
Helix 118
AN1
A
2295 2305Right-handed alpha
Helix 119
AN2
A
2306 2309Right-handed 310
Helix 120
AN3
A
2312 2333Right-handed alpha
Helix 121
AN4
A
2337 2351Right-handed alpha
Helix 122
AN5
A
2357 2369Right-handed alpha
Helix 123
AN6
A
2378 2386Right-handed alpha
Helix 124
AN7
A
2387 2389Right-handed 310
Helix 125
AN8
A
2391 2404Right-handed alpha
Helix 126
AN9
A
2410 2418Right-handed alpha
Helix 127
AO1
A
2419 2426Right-handed alpha
Helix 128
AO2
A
2428 2443Right-handed alpha
Helix 129
AO3
A
2444 2446Right-handed 310
Helix 130
AO4
A
2447 2460Right-handed alpha
Helix 131
AO5
A
2466 2484Right-handed alpha
Helix 132
AO6
A
2494 2509Right-handed alpha
Helix 133
AO7
A
2510 2512Right-handed 310
Helix 134
AO8
A
2514 2527Right-handed alpha
Helix 135
AO9
A
2534 2543Right-handed alpha
Helix 136
AP1
A
2544 2546Right-handed 310
Helix 137
AP2
A
2553 2565Right-handed alpha
Helix 138
AP3
A
2566 2568Right-handed 310
Helix 139
AP4
A
2787 2799Right-handed alpha
Helix 140
AP5
A
2801 2821Right-handed alpha
Helix 141
AP6
A
2825 2847Right-handed alpha
Helix 142
AP7
A
2851 2864Right-handed alpha
Helix 143
AP8
A
2872 2884Right-handed alpha
Helix 144
AP9
A
2885 2897Right-handed alpha
Helix 145
AQ1
A
2919 2933Right-handed alpha
Helix 146
AQ2
A
2935 2946Right-handed alpha
Helix 147
AQ3
A
2951 2962Right-handed alpha
Helix 148
AQ4
A
2966 2977Right-handed alpha
Helix 149
AQ5
A
2987 3005Right-handed alpha
Helix 150
AQ6
A
3007 3017Right-handed alpha
Helix 151
AQ7
A
3034 3055Right-handed alpha
Helix 152
AQ8
A
3060 3069Right-handed alpha
Helix 153
AQ9
A
3075 3081Right-handed alpha
Helix 154
AR1
A
3083 3093Right-handed alpha
Helix 155
AR2
A
3095 3117Right-handed alpha
Helix 156
AR3
A
3124 3130Right-handed alpha
Helix 157
AR4
A
3131 3147Right-handed alpha
Helix 158
AR5
A
3147 3152Right-handed alpha
Helix 159
AR6
A
3154 3167Right-handed alpha
Helix 160
AR7
A
3175 3194Right-handed alpha
Helix 161
AR8
A
3230 3249Right-handed alpha
Helix 162
AR9
A
3253 3263Right-handed alpha
Helix 163
AS1
A
3264 3267Right-handed 310
Helix 164
AS2
A
3272 3290Right-handed alpha
Helix 165
AS3
A
3292 3299Right-handed alpha
Helix 166
AS4
A
3300 3309Right-handed alpha
Helix 167
AS5
A
3314 3318Right-handed 310
Helix 168
AS6
A
3321 3344Right-handed alpha
Helix 169
AS7
A
3352 3360Right-handed alpha
Helix 170
AS8
A
3371 3391Right-handed alpha
Helix 171
AS9
A
3409 3428Right-handed alpha
Helix 172
AT1
A
3441 3457Right-handed alpha
Helix 173
AT2
A
3458 3463Right-handed alpha
Helix 174
AT3
A
3465 3475Right-handed alpha
Helix 175
AT4
A
3479 3487Right-handed alpha
Helix 176
AT5
A
3491 3497Right-handed 310
Helix 177
AT6
A
3498 3506Right-handed alpha
Helix 178
AT7
A
3510 3514Right-handed 310
Helix 179
AT8
A
3515 3525Right-handed alpha
Helix 180
AT9
A
3529 3539Right-handed alpha
Helix 181
AU1
A
3545 3550Right-handed alpha
Helix 182
AU2
A
3551 3562Right-handed alpha
Helix 183
AU3
A
3567 3579Right-handed alpha
Helix 184
AU4
A
3580 3599Right-handed alpha
Helix 185
AU5
A
3605 3615Right-handed alpha
Helix 186
AU6
A
3632 3640Right-handed alpha
Helix 187
AU7
A
3644 3649Right-handed alpha
Helix 188
AU8
A
3660 3662Right-handed 310
Helix 189
AU9
A
3663 3672Right-handed alpha
Helix 190
AV1
A
3680 3683Right-handed 310
Helix 191
AV2
A
3684 3689Right-handed alpha
Helix 192
AV3
A
3758 3776Right-handed alpha
Helix 193
AV4
A
3778 3784Right-handed alpha
Helix 194
AV5
A
3812 3820Right-handed alpha
Helix 195
AV6
A
3821 3830Right-handed alpha
Helix 196
AV7
A
3834 3848Right-handed alpha
Helix 197
AV8
A
3854 3859Right-handed alpha
Helix 198
AV9
A
3860 3862Right-handed 310
Helix 199
AW1
A
3863 3876Right-handed alpha
Helix 200
AW2
A
3881 3889Right-handed alpha
Helix 201
AW3
A
3896 3918Right-handed alpha
Helix 202
AW4
A
3964 3969Right-handed alpha
Helix 203
AW5
A
3970 3972Right-handed 310
Helix 204
AW6
A
3979 3994Right-handed alpha
Helix 205
AW7
A
3996 4007Right-handed alpha
Helix 206
AW8
A
4015 4022Right-handed alpha
Helix 207
AW9
A
4032 4039Right-handed 310
Helix 208
AX1
A
4041 4053Right-handed alpha
Helix 209
AX2
A
4055 4068Right-handed alpha
Helix 210
AX3
A
4073 4083Right-handed alpha
Helix 211
AX4
A
4088 4092Right-handed 310
Helix 212
AX5
A
4099 4112Right-handed alpha
Helix 213
AX6
A
4113 4119Right-handed alpha
Helix 214
AX7
A
4120 4125Right-handed 310
Helix 215
AX8
D
36 49Right-handed alpha
Helix 216
AX9
D
69 76Right-handed alpha
Helix 217
AY1
D
81 91Right-handed alpha
Helix 218
AY2
D
95 100Right-handed 310
Helix 219
AY3
D
137 146Right-handed alpha
Helix 220
AY4
D
154 158Right-handed 310
Helix 221
AY5
E
45 50Right-handed alpha
Helix 222
AY6
E
58 77Right-handed alpha
Helix 223
AY7
E
112 118Right-handed alpha
Helix 224
AY8
E
119 122Right-handed 310
Helix 225
AY9
E
123 135Right-handed alpha
Helix 226
AZ1
E
144 156Right-handed alpha
Helix 227
AZ2
E
179 197Right-handed alpha
Helix 228
AZ3
E
239 243Right-handed 310
Helix 229
AZ4
E
330 337Right-handed alpha
Helix 230
AZ5
E
354 356Right-handed 310
Helix 231
AZ6
E
377 392Right-handed alpha
Helix 232
AZ7
E
439 443Right-handed 310
Helix 233
AZ8
E
458 468Right-handed alpha
Helix 234
AZ9
E
480 495Right-handed alpha
Helix 235
BA1
E
510 519Right-handed alpha
Helix 236
BA2
E
520 530Right-handed alpha
Helix 237
BA3
E
560 571Right-handed alpha
Helix 238
BA4
E
577 589Right-handed alpha
Helix 239
BA5
E
595 609Right-handed alpha
Helix 240
BA6
F
17 22Right-handed alpha
Helix 241
BA7
F
29 48Right-handed alpha
Helix 242
BA8
F
87 95Right-handed alpha
Helix 243
BA9
F
106 122Right-handed alpha
Helix 244
BB1
F
200 216Right-handed alpha
Helix 245
BB2
F
217 224Right-handed 310
Helix 246
BB3
F
227 231Right-handed alpha
Helix 247
BB4
F
306 308Right-handed 310
Helix 248
BB5
F
324 331Right-handed alpha
Helix 249
BB6
F
372 387Right-handed alpha
Helix 250
BB7
F
447 461Right-handed alpha
Helix 251
BB8
F
466 470Right-handed 310
Helix 252
BB9
F
484 500Right-handed alpha
Helix 253
BC1
F
509 516Right-handed alpha
Helix 254
BC2
F
519 526Right-handed alpha
Helix 255
BC3
F
526 537Right-handed alpha
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There are 15 sheets in PDB entry 8RD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
893 895first strand
Strand 2
A
904 906anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3727 3728first strand
Strand 2
A
3736 3738anti-parallel
Strand 3
A
3750 3754anti-parallel
Strand 4
A
3800 3804anti-parallel
Strand 5
A
3793 3797anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3741 3742first strand
Strand 2
A
3746 3747anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3810 3811first strand
Strand 2
A
3928 3930anti-parallel
Strand 3
A
3937 3939anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
52 54first strand
Strand 2
D
30 32parallel
Strand 3
D
62 65parallel
Strand 4
D
79 80parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
102 104first strand
Strand 2
E
82 88anti-parallel
Strand 3
E
35 42parallel
Strand 4
E
161 169parallel
Strand 5
E
199 201parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
258 262first strand
Strand 2
E
268 275anti-parallel
Strand 3
E
366 370anti-parallel
Strand 4
E
431 433anti-parallel
Strand 5
E
409 416anti-parallel
Strand 6
E
394 401anti-parallel
Strand 7
E
344 352anti-parallel
Strand 8
E
258 262parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
288 289first strand
Strand 2
F
310 311anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
300 303first strand
Strand 2
F
290 293anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
325 329first strand
Strand 2
E
316 322anti-parallel
Strand 3
F
277 280anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
419 420first strand
Strand 2
E
426 428anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
81 84first strand
Strand 2
F
53 59anti-parallel
Strand 3
F
9 15parallel
Strand 4
F
130 135parallel
Strand 5
F
161 165parallel
Strand 6
F
225 226parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
248 253first strand
Strand 2
F
257 268anti-parallel
Strand 3
F
357 364anti-parallel
Strand 4
F
417 423anti-parallel
Strand 5
F
404 412anti-parallel
Strand 6
F
390 396anti-parallel
Strand 7
F
339 346anti-parallel
Strand 8
F
248 253parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
314 316first strand
Strand 2
F
319 321anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
464 465first strand
Strand 2
F
474 475anti-parallel
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