Analysis of interatomic Contacts of Structural Units in PDB entry:
8RD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RD7 entry

There are 4 chains in PDB entry 8RD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1616LYS 1690
B
 ASN 1615LYS 1690
C
 ASN 1615ASN 1689
D
 ASN 1616ASN 1689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8RD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1631 1644Right-handed alpha
Helix 2
AA2
B
1631 1644Right-handed alpha
Helix 3
AA3
C
1631 1644Right-handed alpha
Helix 4
AA4
D
1631 1644Right-handed alpha
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There are 4 sheets in PDB entry 8RD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1626 1629first strand
Strand 2
A
1617 1621anti-parallel
Strand 3
A
1675 1680anti-parallel
Strand 4
A
1666 1669anti-parallel
Strand 5
A
1656 1661anti-parallel
Strand 6
A
1648 1653anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1626 1629first strand
Strand 2
B
1617 1621anti-parallel
Strand 3
B
1675 1680anti-parallel
Strand 4
B
1666 1669anti-parallel
Strand 5
B
1656 1661anti-parallel
Strand 6
B
1648 1653anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1626 1629first strand
Strand 2
C
1617 1621anti-parallel
Strand 3
C
1675 1680anti-parallel
Strand 4
C
1666 1669anti-parallel
Strand 5
C
1656 1661anti-parallel
Strand 6
C
1648 1653anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1626 1629first strand
Strand 2
D
1617 1621anti-parallel
Strand 3
D
1675 1680anti-parallel
Strand 4
D
1666 1669anti-parallel
Strand 5
D
1656 1661anti-parallel
Strand 6
D
1648 1653anti-parallel
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