Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDD entry

There are 2 chains in PDB entry 8RDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 1SER 153
B
 SER 155SER 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8RDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 27Right-handed alpha
Helix 2
AA2
B
38 52Right-handed alpha
Helix 3
AA3
B
54 70Right-handed alpha
Helix 4
AA4
B
83 88Right-handed alpha
Helix 5
AA5
B
89 97Right-handed alpha
Helix 6
AA6
B
104 108Right-handed 310
Helix 7
AA7
B
109 124Right-handed alpha
Helix 8
AA8
B
139 149Right-handed alpha
Helix 9
AA9
B
155 164Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8RDD.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
31 37parallel
Strand 3
B
2 8parallel
Strand 4
B
133 136parallel
Strand 5
B
153 154parallel
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