Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RDE entry

There are 2 chains in PDB entry 8RDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1246	ARG 2587
D	VAL 1246	ARG 2587

There are 42 helices in PDB entry 8RDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1402	1406	Right-handed 310
Helix 2	AA2	A	1416	1423	Right-handed alpha
Helix 3	AA3	A	1448	1454	Right-handed alpha
Helix 4	AA4	A	1471	1476	Right-handed alpha
Helix 5	AA5	A	1478	1492	Right-handed alpha
Helix 6	AA6	A	1495	1512	Right-handed alpha
Helix 7	AA7	A	1520	1525	Right-handed alpha
Helix 8	AA8	A	1858	1863	Right-handed alpha
Helix 9	AA9	A	1865	1879	Right-handed alpha
Helix 10	AB1	A	1882	1900	Right-handed alpha
Helix 11	AB2	A	2170	2175	Right-handed alpha
Helix 12	AB3	A	2212	2221	Right-handed alpha
Helix 13	AB4	A	2221	2233	Right-handed alpha
Helix 14	AB5	A	2240	2245	Right-handed alpha
Helix 15	AB6	A	2247	2257	Right-handed alpha
Helix 16	AB7	A	2265	2279	Right-handed alpha
Helix 17	AB8	A	2280	2282	Right-handed 310
Helix 18	AB9	A	2323	2328	Right-handed alpha
Helix 19	AC1	A	2462	2466	Right-handed 310
Helix 20	AC2	A	2556	2562	Right-handed alpha
Helix 21	AC3	A	2568	2573	Right-handed alpha
Helix 22	AC4	D	1402	1406	Right-handed 310
Helix 23	AC5	D	1416	1423	Right-handed alpha
Helix 24	AC6	D	1448	1454	Right-handed alpha
Helix 25	AC7	D	1471	1476	Right-handed alpha
Helix 26	AC8	D	1478	1492	Right-handed alpha
Helix 27	AC9	D	1495	1512	Right-handed alpha
Helix 28	AD1	D	1520	1525	Right-handed alpha
Helix 29	AD2	D	1858	1863	Right-handed alpha
Helix 30	AD3	D	1865	1879	Right-handed alpha
Helix 31	AD4	D	1882	1900	Right-handed alpha
Helix 32	AD5	D	2170	2175	Right-handed alpha
Helix 33	AD6	D	2212	2221	Right-handed alpha
Helix 34	AD7	D	2221	2233	Right-handed alpha
Helix 35	AD8	D	2240	2245	Right-handed alpha
Helix 36	AD9	D	2247	2257	Right-handed alpha
Helix 37	AE1	D	2265	2279	Right-handed alpha
Helix 38	AE2	D	2280	2282	Right-handed 310
Helix 39	AE3	D	2323	2328	Right-handed alpha
Helix 40	AE4	D	2462	2466	Right-handed 310
Helix 41	AE5	D	2556	2562	Right-handed alpha
Helix 42	AE6	D	2568	2573	Right-handed alpha

There are 40 sheets in PDB entry 8RDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1268	1269	first strand
Strand 2	A	1260	1262	anti-parallel
Strand 3	A	1251	1256	anti-parallel
Strand 4	A	1378	1383	anti-parallel
Strand 5	A	1370	1374	anti-parallel
Strand 6	A	1362	1364	anti-parallel
Strand 7	A	1353	1354	anti-parallel
Strand 8	A	1345	1346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1323	1326	first strand
Strand 2	A	1310	1318	anti-parallel
Strand 3	A	1296	1303	anti-parallel
Strand 4	A	1277	1281	anti-parallel
Strand 5	A	1392	1393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1535	1540	first strand
Strand 2	A	1564	1568	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1574	1576	first strand
Strand 2	A	1579	1581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1613	1615	first strand
Strand 2	A	1620	1622	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1632	1636	first strand
Strand 2	A	1642	1646	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1649	1654	first strand
Strand 2	A	1775	1780	anti-parallel
Strand 3	A	1766	1769	anti-parallel
Strand 4	A	1756	1760	anti-parallel
Strand 5	A	1749	1753	anti-parallel
Strand 6	A	1742	1743	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1659	1661	first strand
Strand 2	A	1667	1669	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1676	1678	first strand
Strand 2	A	1694	1699	anti-parallel
Strand 3	A	1708	1716	anti-parallel
Strand 4	A	1719	1724	anti-parallel
Strand 5	A	1731	1733	anti-parallel
Strand 6	A	1736	1738	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1921	1927	first strand
Strand 2	A	1948	1953	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1972	1974	first strand
Strand 2	A	1977	1979	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1984	1985	first strand
Strand 2	A	1995	1997	anti-parallel
Strand 3	A	2003	2005	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2015	2020	first strand
Strand 2	A	2023	2028	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2032	2036	first strand
Strand 2	A	2148	2152	anti-parallel
Strand 3	A	2139	2142	anti-parallel
Strand 4	A	2129	2134	anti-parallel
Strand 5	A	2121	2126	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2095	2097	first strand
Strand 2	A	2089	2092	anti-parallel
Strand 3	A	2073	2077	anti-parallel
Strand 4	A	2058	2063	anti-parallel
Strand 5	A	2160	2162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2303	2305	first strand
Strand 2	A	2333	2335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2396	2400	first strand
Strand 2	A	2403	2407	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2420	2422	first strand
Strand 2	A	2413	2417	anti-parallel
Strand 3	A	2534	2537	anti-parallel
Strand 4	A	2525	2528	anti-parallel
Strand 5	A	2516	2520	anti-parallel
Strand 6	A	2506	2510	anti-parallel
Strand 7	A	2500	2502	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2435	2441	first strand
Strand 2	A	2454	2459	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2472	2476	first strand
Strand 2	A	2479	2483	anti-parallel
Strand 3	A	2489	2491	anti-parallel
Strand 4	A	2494	2496	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1268	1269	first strand
Strand 2	D	1260	1262	anti-parallel
Strand 3	D	1251	1256	anti-parallel
Strand 4	D	1378	1383	anti-parallel
Strand 5	D	1370	1374	anti-parallel
Strand 6	D	1362	1364	anti-parallel
Strand 7	D	1353	1354	anti-parallel
Strand 8	D	1345	1346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1323	1326	first strand
Strand 2	D	1310	1318	anti-parallel
Strand 3	D	1296	1303	anti-parallel
Strand 4	D	1277	1281	anti-parallel
Strand 5	D	1392	1393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1535	1540	first strand
Strand 2	D	1564	1568	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1574	1576	first strand
Strand 2	D	1579	1581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1613	1615	first strand
Strand 2	D	1620	1622	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1632	1636	first strand
Strand 2	D	1642	1646	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1649	1654	first strand
Strand 2	D	1775	1780	anti-parallel
Strand 3	D	1766	1769	anti-parallel
Strand 4	D	1756	1760	anti-parallel
Strand 5	D	1749	1753	anti-parallel
Strand 6	D	1742	1743	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1659	1661	first strand
Strand 2	D	1667	1669	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1676	1678	first strand
Strand 2	D	1694	1699	anti-parallel
Strand 3	D	1708	1716	anti-parallel
Strand 4	D	1719	1724	anti-parallel
Strand 5	D	1731	1733	anti-parallel
Strand 6	D	1736	1738	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1921	1927	first strand
Strand 2	D	1948	1953	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1972	1974	first strand
Strand 2	D	1977	1979	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1984	1985	first strand
Strand 2	D	1995	1997	anti-parallel
Strand 3	D	2003	2005	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2015	2020	first strand
Strand 2	D	2023	2028	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2032	2036	first strand
Strand 2	D	2148	2152	anti-parallel
Strand 3	D	2139	2142	anti-parallel
Strand 4	D	2129	2134	anti-parallel
Strand 5	D	2121	2126	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2095	2097	first strand
Strand 2	D	2089	2092	anti-parallel
Strand 3	D	2073	2077	anti-parallel
Strand 4	D	2058	2063	anti-parallel
Strand 5	D	2160	2162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2303	2305	first strand
Strand 2	D	2333	2335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2396	2400	first strand
Strand 2	D	2403	2407	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2420	2422	first strand
Strand 2	D	2413	2417	anti-parallel
Strand 3	D	2534	2537	anti-parallel
Strand 4	D	2525	2528	anti-parallel
Strand 5	D	2516	2520	anti-parallel
Strand 6	D	2506	2510	anti-parallel
Strand 7	D	2500	2502	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2435	2441	first strand
Strand 2	D	2454	2459	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2472	2476	first strand
Strand 2	D	2479	2483	anti-parallel
Strand 3	D	2489	2491	anti-parallel
Strand 4	D	2494	2496	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDE