Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDG entry

There are 2 chains in PDB entry 8RDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 315
B
 MET 1GLU 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8RDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
37 45Right-handed 310
Helix 3
AA3
A
59 67Right-handed alpha
Helix 4
AA4
A
81 87Right-handed 310
Helix 5
AA5
A
88 97Right-handed alpha
Helix 6
AA6
A
97 108Right-handed alpha
Helix 7
AA7
A
122 125Right-handed 310
Helix 8
AA8
A
143 164Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
214 231Right-handed alpha
Helix 11
AB2
A
248 259Right-handed alpha
Helix 12
AB3
A
288 293Right-handed alpha
Helix 13
AB4
A
301 315Right-handed alpha
Helix 14
AB5
B
10 23Right-handed alpha
Helix 15
AB6
B
37 45Right-handed 310
Helix 16
AB7
B
59 68Right-handed alpha
Helix 17
AB8
B
83 87Right-handed 310
Helix 18
AB9
B
88 109Right-handed alpha
Helix 19
AC1
B
122 125Right-handed 310
Helix 20
AC2
B
143 164Right-handed alpha
Helix 21
AC3
B
182 195Right-handed alpha
Helix 22
AC4
B
214 231Right-handed alpha
Helix 23
AC5
B
248 259Right-handed alpha
Helix 24
AC6
B
288 293Right-handed alpha
Helix 25
AC7
B
301 315Right-handed alpha
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There are 8 sheets in PDB entry 8RDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
72 75parallel
Strand 5
A
114 120parallel
Strand 6
A
166 172parallel
Strand 7
A
235 240parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
211 213parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
264 267parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
208 209anti-parallel
Strand 3
A
283 284parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
26 31parallel
Strand 3
B
2 6parallel
Strand 4
B
72 75parallel
Strand 5
B
114 120parallel
Strand 6
B
166 172parallel
Strand 7
B
235 240parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
211 213parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
264 267parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
208 209anti-parallel
Strand 3
B
283 284parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il