Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDI entry

There are 4 chains in PDB entry 8RDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 316
B
 MET 1GLU 316
C
 MET 1GLU 316
D
 MET 1GLU 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 8RDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
38 43Right-handed alpha
Helix 3
AA3
A
59 67Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
88 97Right-handed alpha
Helix 6
AA6
A
97 109Right-handed alpha
Helix 7
AA7
A
122 125Right-handed 310
Helix 8
AA8
A
143 163Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
214 231Right-handed alpha
Helix 11
AB2
A
248 259Right-handed alpha
Helix 12
AB3
A
288 293Right-handed alpha
Helix 13
AB4
A
301 316Right-handed alpha
Helix 14
AB5
B
10 23Right-handed alpha
Helix 15
AB6
B
38 42Right-handed 310
Helix 16
AB7
B
59 67Right-handed alpha
Helix 17
AB8
B
82 86Right-handed 310
Helix 18
AB9
B
88 97Right-handed alpha
Helix 19
AC1
B
97 109Right-handed alpha
Helix 20
AC2
B
122 125Right-handed 310
Helix 21
AC3
B
143 163Right-handed alpha
Helix 22
AC4
B
183 195Right-handed alpha
Helix 23
AC5
B
214 231Right-handed alpha
Helix 24
AC6
B
248 259Right-handed alpha
Helix 25
AC7
B
288 293Right-handed alpha
Helix 26
AC8
B
301 316Right-handed alpha
Helix 27
AC9
C
10 23Right-handed alpha
Helix 28
AD1
C
38 43Right-handed alpha
Helix 29
AD2
C
59 67Right-handed alpha
Helix 30
AD3
C
81 85Right-handed 310
Helix 31
AD4
C
88 109Right-handed alpha
Helix 32
AD5
C
122 125Right-handed 310
Helix 33
AD6
C
143 163Right-handed alpha
Helix 34
AD7
C
183 195Right-handed alpha
Helix 35
AD8
C
214 231Right-handed alpha
Helix 36
AD9
C
248 259Right-handed alpha
Helix 37
AE1
C
288 293Right-handed alpha
Helix 38
AE2
C
301 316Right-handed alpha
Helix 39
AE3
D
10 23Right-handed alpha
Helix 40
AE4
D
38 42Right-handed 310
Helix 41
AE5
D
59 67Right-handed alpha
Helix 42
AE6
D
81 86Right-handed 310
Helix 43
AE7
D
88 97Right-handed alpha
Helix 44
AE8
D
97 109Right-handed alpha
Helix 45
AE9
D
122 125Right-handed 310
Helix 46
AF1
D
143 164Right-handed alpha
Helix 47
AF2
D
183 195Right-handed alpha
Helix 48
AF3
D
214 231Right-handed alpha
Helix 49
AF4
D
248 259Right-handed alpha
Helix 50
AF5
D
288 293Right-handed alpha
Helix 51
AF6
D
301 316Right-handed alpha
Back to top of page

There are 16 sheets in PDB entry 8RDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
26 30parallel
Strand 3
A
2 6parallel
Strand 4
A
72 75parallel
Strand 5
A
114 120parallel
Strand 6
A
166 172parallel
Strand 7
A
235 240parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
264 267parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
246 247anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
26 30parallel
Strand 3
B
2 6parallel
Strand 4
B
72 75parallel
Strand 5
B
114 120parallel
Strand 6
B
166 172parallel
Strand 7
B
235 240parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
C
50 53anti-parallel
Strand 3
C
26 30parallel
Strand 4
C
2 6parallel
Strand 5
C
72 75parallel
Strand 6
C
114 120parallel
Strand 7
C
166 172parallel
Strand 8
C
235 240parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
264 267parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
246 247anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 176first strand
Strand 2
C
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
198 201first strand
Strand 2
C
264 267parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 209first strand
Strand 2
C
246 247anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 53first strand
Strand 2
D
26 30parallel
Strand 3
D
2 6parallel
Strand 4
D
72 75parallel
Strand 5
D
114 120parallel
Strand 6
D
166 172parallel
Strand 7
D
235 240parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 176first strand
Strand 2
D
211 213parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 201first strand
Strand 2
D
264 267parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 209first strand
Strand 2
D
246 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il