Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDL entry

There is 1 chain in PDB entry 8RDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 24PRO 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8RDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 36Right-handed alpha
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
71 86Right-handed alpha
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
119 133Right-handed alpha
Helix 7
AA7
A
150 154Right-handed 310
Helix 8
AA8
A
193 205Right-handed alpha
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There are 2 sheets in PDB entry 8RDL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
64 69parallel
Strand 3
A
42 46parallel
Strand 4
A
105 111parallel
Strand 5
A
134 144parallel
Strand 6
A
239 244anti-parallel
Strand 7
A
208 212anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 169first strand
Strand 2
A
172 179anti-parallel
Strand 3
A
185 192anti-parallel
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