Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDO entry

There is 1 chain in PDB entry 8RDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10ALA 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8RDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
20 34Right-handed alpha
Helix 3
AA3
A
35 41Right-handed alpha
Helix 4
AA4
A
47 55Right-handed alpha
Helix 5
AA5
A
57 71Right-handed alpha
Helix 6
AA6
A
85 90Right-handed alpha
Helix 7
AA7
A
99 107Right-handed alpha
Helix 8
AA8
A
108 113Right-handed alpha
Helix 9
AA9
A
114 116Right-handed 310
Helix 10
AB1
A
117 125Right-handed alpha
Helix 11
AB2
A
128 134Right-handed alpha
Helix 12
AB3
A
136 143Right-handed alpha
Helix 13
AB4
A
144 164Right-handed alpha
Helix 14
AB5
A
165 169Right-handed 310
Helix 15
AB6
A
186 194Right-handed alpha
Helix 16
AB7
A
206 220Right-handed alpha
Helix 17
AB8
A
249 253Right-handed 310
Helix 18
AB9
A
254 270Right-handed alpha
Helix 19
AC1
A
294 307Right-handed alpha
Helix 20
AC2
A
313 323Right-handed alpha
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There are 3 sheets in PDB entry 8RDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
81 84anti-parallel
Strand 3
A
74 78anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
200 205parallel
Strand 3
A
177 181parallel
Strand 4
A
243 247parallel
Strand 5
A
274 279parallel
Strand 6
A
340 346anti-parallel
Strand 7
A
325 332anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
311 312parallel
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