Analysis of interatomic Contacts of Structural Units in PDB entry:
8RDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RDY entry

There are 2 chains in PDB entry 8RDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 52LEU 718
B
 TRP 122TRP 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8RDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 68Right-handed alpha
Helix 2
AA2
A
80 91Right-handed alpha
Helix 3
AA3
A
93 108Right-handed alpha
Helix 4
AA4
A
125 135Right-handed alpha
Helix 5
AA5
A
136 139Right-handed 310
Helix 6
AA6
A
149 164Right-handed alpha
Helix 7
AA7
A
193 203Right-handed alpha
Helix 8
AA8
A
221 238Right-handed alpha
Helix 9
AA9
A
252 259Right-handed alpha
Helix 10
AB1
A
285 301Right-handed alpha
Helix 11
AB2
A
312 335Right-handed alpha
Helix 12
AB3
A
349 354Right-handed alpha
Helix 13
AB4
A
355 358Right-handed 310
Helix 14
AB5
A
417 427Right-handed alpha
Helix 15
AB6
A
441 448Right-handed alpha
Helix 16
AB7
A
455 460Right-handed 310
Helix 17
AB8
A
461 472Right-handed alpha
Helix 18
AB9
A
487 501Right-handed alpha
Helix 19
AC1
A
511 520Right-handed alpha
Helix 20
AC2
A
523 533Right-handed alpha
Helix 21
AC3
A
534 537Right-handed 310
Helix 22
AC4
A
538 550Right-handed alpha
Helix 23
AC5
A
561 573Right-handed alpha
Helix 24
AC6
A
577 590Right-handed alpha
Helix 25
AC7
A
591 598Right-handed alpha
Helix 26
AC8
A
598 606Right-handed alpha
Helix 27
AC9
A
609 631Right-handed alpha
Helix 28
AD1
A
643 654Right-handed alpha
Helix 29
AD2
A
714 718Right-handed 310
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There are 4 sheets in PDB entry 8RDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
188 192parallel
Strand 4
A
142 147parallel
Strand 5
A
209 214parallel
Strand 6
A
242 247parallel
Strand 7
A
111 116parallel
Strand 8
A
264 267parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
370 375parallel
Strand 3
A
305 309parallel
Strand 4
A
388 393parallel
Strand 5
A
434 438parallel
Strand 6
A
274 278parallel
Strand 7
B
127 132anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 403first strand
Strand 2
A
408 415anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
670 672anti-parallel
Strand 3
A
678 681anti-parallel
Strand 4
A
706 712parallel
Strand 5
A
693 700anti-parallel
Strand 6
A
660 663anti-parallel
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