Analysis of interatomic Contacts of Structural Units in PDB entry:
8RE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RE2 entry

There is 1 chain in PDB entry 8RE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 19LYS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8RE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
50 62Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
84 92Right-handed alpha
Helix 5
AA5
A
94 99Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
109 117Right-handed 310
Helix 8
AA8
A
119 127Right-handed 310
Helix 9
AA9
A
146 163Right-handed alpha
Helix 10
AB1
A
178 182Right-handed 310
Helix 11
AB2
A
212 216Right-handed 310
Helix 12
AB3
A
233 238Right-handed alpha
Helix 13
AB4
A
251 263Right-handed alpha
Helix 14
AB5
A
264 267Right-handed 310
Helix 15
AB6
A
269 279Right-handed alpha
Helix 16
AB7
A
295 301Right-handed alpha
Helix 17
AB8
A
323 329Right-handed alpha
Helix 18
AB9
A
340 345Right-handed 310
Helix 19
AC1
A
364 369Right-handed 310
Helix 20
AC2
A
381 393Right-handed alpha
Helix 21
AC3
A
397 401Right-handed 310
Helix 22
AC4
A
449 458Right-handed alpha
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There are 4 sheets in PDB entry 8RE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
138 144anti-parallel
Strand 3
A
40 48anti-parallel
Strand 4
A
167 176anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
210 211parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
372 379anti-parallel
Strand 3
A
241 250anti-parallel
Strand 4
A
437 447anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
427 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il