Analysis of interatomic Contacts of Structural Units in PDB entry:
8RE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RE3 entry

There are 2 chains in PDB entry 8RE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 16LYS 460
B
 HIS 16LYS 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8RE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 33Right-handed alpha
Helix 2
AA2
A
50 62Right-handed alpha
Helix 3
AA3
A
63 65Right-handed 310
Helix 4
AA4
A
85 92Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
109 111Right-handed 310
Helix 8
AA8
A
112 117Right-handed alpha
Helix 9
AA9
A
119 127Right-handed 310
Helix 10
AB1
A
146 163Right-handed alpha
Helix 11
AB2
A
178 182Right-handed 310
Helix 12
AB3
A
212 216Right-handed 310
Helix 13
AB4
A
233 238Right-handed alpha
Helix 14
AB5
A
251 263Right-handed alpha
Helix 15
AB6
A
264 267Right-handed 310
Helix 16
AB7
A
269 279Right-handed alpha
Helix 17
AB8
A
295 300Right-handed alpha
Helix 18
AB9
A
323 329Right-handed alpha
Helix 19
AC1
A
340 344Right-handed 310
Helix 20
AC2
A
363 368Right-handed alpha
Helix 21
AC3
A
381 393Right-handed alpha
Helix 22
AC4
A
397 401Right-handed 310
Helix 23
AC5
A
449 458Right-handed alpha
Helix 24
AC6
B
28 33Right-handed alpha
Helix 25
AC7
B
50 62Right-handed alpha
Helix 26
AC8
B
63 65Right-handed 310
Helix 27
AC9
B
84 92Right-handed alpha
Helix 28
AD1
B
94 100Right-handed alpha
Helix 29
AD2
B
102 108Right-handed alpha
Helix 30
AD3
B
109 111Right-handed 310
Helix 31
AD4
B
112 117Right-handed alpha
Helix 32
AD5
B
119 127Right-handed 310
Helix 33
AD6
B
146 163Right-handed alpha
Helix 34
AD7
B
178 182Right-handed 310
Helix 35
AD8
B
212 216Right-handed 310
Helix 36
AD9
B
233 238Right-handed alpha
Helix 37
AE1
B
251 263Right-handed alpha
Helix 38
AE2
B
264 267Right-handed 310
Helix 39
AE3
B
269 279Right-handed alpha
Helix 40
AE4
B
295 300Right-handed alpha
Helix 41
AE5
B
323 329Right-handed alpha
Helix 42
AE6
B
340 344Right-handed 310
Helix 43
AE7
B
364 369Right-handed 310
Helix 44
AE8
B
381 393Right-handed alpha
Helix 45
AE9
B
397 401Right-handed 310
Helix 46
AF1
B
449 458Right-handed alpha
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There are 5 sheets in PDB entry 8RE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 176first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
77 84anti-parallel
Strand 5
A
437 447anti-parallel
Strand 6
A
241 250anti-parallel
Strand 7
A
372 379anti-parallel
Strand 8
A
347 353anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
428 430anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 83first strand
Strand 2
B
138 144anti-parallel
Strand 3
B
40 48anti-parallel
Strand 4
B
167 176anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 353first strand
Strand 2
B
372 379anti-parallel
Strand 3
B
241 250anti-parallel
Strand 4
B
437 447anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 421first strand
Strand 2
B
428 430anti-parallel
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