Analysis of interatomic Contacts of Structural Units in PDB entry:
8REE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8REE entry

There are 9 chains in PDB entry 8REE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	ALA 324
B	SER 4	ARG 238
C	MET 1	ASP 1341
D	LEU 4	GLY 1376
E	ALA 2	GLN 75
M	ALA 94	GLN 472
N	G -29	T 25
R	G -1	C 7
T	A -51	C 29

There are126 helices in PDB entry 8REE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	159	163	Right-handed 310
Helix 5	AA5	A	212	229	Right-handed alpha
Helix 6	AA6	A	263	274	Right-handed alpha
Helix 7	AA7	A	277	283	Right-handed alpha
Helix 8	AA8	A	285	290	Right-handed alpha
Helix 9	AA9	A	296	310	Right-handed alpha
Helix 10	AB1	B	34	50	Right-handed alpha
Helix 11	AB2	B	70	74	Right-handed 310
Helix 12	AB3	B	77	87	Right-handed alpha
Helix 13	AB4	B	113	115	Right-handed 310
Helix 14	AB5	B	164	171	Right-handed alpha
Helix 15	AB6	B	212	227	Right-handed alpha
Helix 16	AB7	B	228	233	Right-handed alpha
Helix 17	AB8	C	4	10	Right-handed alpha
Helix 18	AB9	C	28	40	Right-handed alpha
Helix 19	AC1	C	48	57	Right-handed alpha
Helix 20	AC2	C	81	89	Right-handed alpha
Helix 21	AC3	C	159	163	Right-handed 310
Helix 22	AC4	C	198	201	Right-handed 310
Helix 23	AC5	C	206	213	Right-handed alpha
Helix 24	AC6	C	216	225	Right-handed alpha
Helix 25	AC7	C	270	280	Right-handed alpha
Helix 26	AC8	C	288	295	Right-handed 310
Helix 27	AC9	C	318	329	Right-handed alpha
Helix 28	AD1	C	347	354	Right-handed alpha
Helix 29	AD2	C	358	371	Right-handed alpha
Helix 30	AD3	C	379	389	Right-handed alpha
Helix 31	AD4	C	398	409	Right-handed alpha
Helix 32	AD5	C	421	438	Right-handed alpha
Helix 33	AD6	C	455	477	Right-handed alpha
Helix 34	AD7	C	478	481	Right-handed 310
Helix 35	AD8	C	494	508	Right-handed alpha
Helix 36	AD9	C	518	528	Right-handed alpha
Helix 37	AE1	C	609	613	Right-handed 310
Helix 38	AE2	C	662	667	Right-handed alpha
Helix 39	AE3	C	670	674	Right-handed 310
Helix 40	AE4	C	675	687	Right-handed alpha
Helix 41	AE5	C	704	711	Right-handed alpha
Helix 42	AE6	C	820	825	Right-handed alpha
Helix 43	AE7	C	896	906	Right-handed alpha
Helix 44	AE8	C	942	982	Right-handed alpha
Helix 45	AE9	C	986	992	Right-handed alpha
Helix 46	AF1	C	992	1000	Right-handed alpha
Helix 47	AF2	C	1003	1009	Right-handed alpha
Helix 48	AF3	C	1009	1037	Right-handed alpha
Helix 49	AF4	C	1081	1085	Right-handed 310
Helix 50	AF5	C	1099	1101	Right-handed 310
Helix 51	AF6	C	1102	1107	Right-handed alpha
Helix 52	AF7	C	1108	1134	Right-handed alpha
Helix 53	AF8	C	1137	1150	Right-handed alpha
Helix 54	AF9	C	1165	1176	Right-handed alpha
Helix 55	AG1	C	1191	1202	Right-handed alpha
Helix 56	AG2	C	1238	1242	Right-handed 310
Helix 57	AG3	C	1271	1282	Right-handed alpha
Helix 58	AG4	C	1284	1292	Right-handed alpha
Helix 59	AG5	C	1297	1311	Right-handed alpha
Helix 60	AG6	C	1320	1333	Right-handed alpha
Helix 61	AG7	D	26	34	Right-handed alpha
Helix 62	AG8	D	70	74	Right-handed 310
Helix 63	AG9	D	96	100	Right-handed 310
Helix 64	AH1	D	113	118	Right-handed alpha
Helix 65	AH2	D	122	128	Right-handed alpha
Helix 66	AH3	D	131	140	Right-handed alpha
Helix 67	AH4	D	161	172	Right-handed alpha
Helix 68	AH5	D	181	192	Right-handed alpha
Helix 69	AH6	D	193	208	Right-handed alpha
Helix 70	AH7	D	212	231	Right-handed alpha
Helix 71	AH8	D	233	237	Right-handed 310
Helix 72	AH9	D	246	250	Right-handed 310
Helix 73	AI1	D	263	285	Right-handed alpha
Helix 74	AI2	D	288	308	Right-handed alpha
Helix 75	AI3	D	377	388	Right-handed alpha
Helix 76	AI4	D	393	404	Right-handed alpha
Helix 77	AI5	D	405	417	Right-handed alpha
Helix 78	AI6	D	430	432	Right-handed 310
Helix 79	AI7	D	450	452	Right-handed 310
Helix 80	AI8	D	453	458	Right-handed alpha
Helix 81	AI9	D	473	483	Right-handed alpha
Helix 82	AJ1	D	504	514	Right-handed alpha
Helix 83	AJ2	D	529	539	Right-handed alpha
Helix 84	AJ3	D	574	581	Right-handed alpha
Helix 85	AJ4	D	588	592	Right-handed 310
Helix 86	AJ5	D	599	612	Right-handed alpha
Helix 87	AJ6	D	614	636	Right-handed alpha
Helix 88	AJ7	D	649	671	Right-handed alpha
Helix 89	AJ8	D	674	703	Right-handed alpha
Helix 90	AJ9	D	720	728	Right-handed alpha
Helix 91	AK1	D	733	738	Right-handed alpha
Helix 92	AK2	D	768	805	Right-handed alpha
Helix 93	AK3	D	834	840	Right-handed alpha
Helix 94	AK4	D	865	875	Right-handed alpha
Helix 95	AK5	D	884	888	Right-handed 310
Helix 96	AK6	D	914	925	Right-handed alpha
Helix 97	AK7	D	1140	1146	Right-handed alpha
Helix 98	AK8	D	1216	1224	Right-handed alpha
Helix 99	AK9	D	1225	1244	Right-handed alpha
Helix 100	AL1	D	1249	1260	Right-handed alpha
Helix 101	AL2	D	1279	1293	Right-handed alpha
Helix 102	AL3	D	1295	1299	Right-handed 310
Helix 103	AL4	D	1308	1315	Right-handed alpha
Helix 104	AL5	D	1327	1339	Right-handed alpha
Helix 105	AL6	D	1346	1354	Right-handed alpha
Helix 106	AL7	D	1360	1376	Right-handed alpha
Helix 107	AL8	E	6	13	Right-handed alpha
Helix 108	AL9	E	17	33	Right-handed alpha
Helix 109	AM1	E	45	56	Right-handed alpha
Helix 110	AM2	E	60	75	Right-handed alpha
Helix 111	AM3	M	123	131	Right-handed alpha
Helix 112	AM4	M	134	147	Right-handed alpha
Helix 113	AM5	M	157	166	Right-handed alpha
Helix 114	AM6	M	172	184	Right-handed alpha
Helix 115	AM7	M	194	205	Right-handed alpha
Helix 116	AM8	M	216	223	Right-handed alpha
Helix 117	AM9	M	224	231	Right-handed alpha
Helix 118	AN1	M	234	239	Right-handed alpha
Helix 119	AN2	M	242	256	Right-handed alpha
Helix 120	AN3	M	290	294	Right-handed 310
Helix 121	AN4	M	341	355	Right-handed alpha
Helix 122	AN5	M	366	374	Right-handed alpha
Helix 123	AN6	M	377	385	Right-handed alpha
Helix 124	AN7	M	417	430	Right-handed alpha
Helix 125	AN8	M	438	450	Right-handed alpha
Helix 126	AN9	M	457	466	Right-handed alpha

There are 44 sheets in PDB entry 8REE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	195	206	anti-parallel
Strand 4	B	182	192	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	61	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	97	105	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	129	131	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	122	128	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	512	513	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	185	188	anti-parallel
Strand 4	C	194	196	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	238	239	anti-parallel
Strand 3	C	228	231	anti-parallel
Strand 4	C	332	335	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	654	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	637	first strand
Strand 2	C	642	646	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	723	727	first strand
Strand 2	C	731	735	anti-parallel
Strand 3	C	749	752	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	926	931	anti-parallel
Strand 4	C	876	877	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	934	935	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1338	first strand
Strand 2	D	21	24	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	111	first strand
Strand 2	D	239	243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	177	179	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	260	261	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	527	first strand
Strand 2	D	547	556	parallel
Strand 3	D	564	573	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	827	first strand
Strand 2	D	830	833	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1060	first strand
Strand 2	D	1106	1107	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1174	1177	first strand
Strand 2	D	1188	1190	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1265	1266	first strand
Strand 2	D	1302	1303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8REE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8REE