Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RF0 entry

There is 1 chain in PDB entry 8RF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	GLY 2818

There are 96 helices in PDB entry 8RF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	45	Right-handed alpha
Helix 2	AA2	A	57	79	Right-handed alpha
Helix 3	AA3	A	87	96	Right-handed alpha
Helix 4	AA4	A	96	105	Right-handed alpha
Helix 5	AA5	A	112	118	Right-handed alpha
Helix 6	AA6	A	130	142	Right-handed alpha
Helix 7	AA7	A	148	160	Right-handed alpha
Helix 8	AA8	A	172	212	Right-handed alpha
Helix 9	AA9	A	216	225	Right-handed alpha
Helix 10	AB1	A	226	229	Right-handed 310
Helix 11	AB2	A	233	244	Right-handed alpha
Helix 12	AB3	A	251	254	Right-handed 310
Helix 13	AB4	A	255	261	Right-handed alpha
Helix 14	AB5	A	262	265	Right-handed 310
Helix 15	AB6	A	267	276	Right-handed alpha
Helix 16	AB7	A	278	298	Right-handed alpha
Helix 17	AB8	A	300	308	Right-handed alpha
Helix 18	AB9	A	309	314	Right-handed alpha
Helix 19	AC1	A	319	323	Right-handed 310
Helix 20	AC2	A	324	342	Right-handed alpha
Helix 21	AC3	A	348	358	Right-handed alpha
Helix 22	AC4	A	359	361	Right-handed 310
Helix 23	AC5	A	373	378	Right-handed alpha
Helix 24	AC6	A	381	390	Right-handed alpha
Helix 25	AC7	A	394	407	Right-handed alpha
Helix 26	AC8	A	408	430	Right-handed alpha
Helix 27	AC9	A	439	467	Right-handed alpha
Helix 28	AD1	A	499	515	Right-handed alpha
Helix 29	AD2	A	538	557	Right-handed alpha
Helix 30	AD3	A	587	599	Right-handed alpha
Helix 31	AD4	A	633	643	Right-handed alpha
Helix 32	AD5	A	644	647	Right-handed 310
Helix 33	AD6	A	679	685	Right-handed alpha
Helix 34	AD7	A	702	707	Right-handed alpha
Helix 35	AD8	A	719	730	Right-handed alpha
Helix 36	AD9	A	737	746	Right-handed alpha
Helix 37	AE1	A	766	781	Right-handed alpha
Helix 38	AE2	A	781	787	Right-handed alpha
Helix 39	AE3	A	793	824	Right-handed alpha
Helix 40	AE4	A	828	850	Right-handed alpha
Helix 41	AE5	A	867	906	Right-handed alpha
Helix 42	AE6	A	927	936	Right-handed alpha
Helix 43	AE7	A	937	951	Right-handed alpha
Helix 44	AE8	A	956	969	Right-handed alpha
Helix 45	AE9	A	969	979	Right-handed alpha
Helix 46	AF1	A	991	1005	Right-handed alpha
Helix 47	AF2	A	1005	1011	Right-handed alpha
Helix 48	AF3	A	1037	1055	Right-handed alpha
Helix 49	AF4	A	1058	1076	Right-handed alpha
Helix 50	AF5	A	1102	1125	Right-handed alpha
Helix 51	AF6	A	1135	1150	Right-handed alpha
Helix 52	AF7	A	1159	1182	Right-handed alpha
Helix 53	AF8	A	1186	1209	Right-handed alpha
Helix 54	AF9	A	1213	1238	Right-handed alpha
Helix 55	AG1	A	1244	1263	Right-handed alpha
Helix 56	AG2	A	1285	1287	Right-handed 310
Helix 57	AG3	A	1301	1312	Right-handed alpha
Helix 58	AG4	A	1315	1320	Right-handed alpha
Helix 59	AG5	A	1342	1352	Right-handed alpha
Helix 60	AG6	A	1358	1379	Right-handed alpha
Helix 61	AG7	A	1421	1428	Right-handed alpha
Helix 62	AG8	A	1432	1446	Right-handed alpha
Helix 63	AG9	A	1482	1494	Right-handed alpha
Helix 64	AH1	A	1496	1503	Right-handed alpha
Helix 65	AH2	A	1505	1511	Right-handed alpha
Helix 66	AH3	A	1512	1515	Right-handed 310
Helix 67	AH4	A	1552	1556	Right-handed 310
Helix 68	AH5	A	1696	1703	Right-handed alpha
Helix 69	AH6	A	1750	1756	Right-handed alpha
Helix 70	AH7	A	1810	1822	Right-handed alpha
Helix 71	AH8	A	1830	1845	Right-handed alpha
Helix 72	AH9	A	1848	1864	Right-handed alpha
Helix 73	AI1	A	1909	1923	Right-handed alpha
Helix 74	AI2	A	1937	1957	Right-handed alpha
Helix 75	AI3	A	1977	1988	Right-handed alpha
Helix 76	AI4	A	2001	2011	Right-handed alpha
Helix 77	AI5	A	2212	2216	Right-handed 310
Helix 78	AI6	A	2256	2261	Right-handed alpha
Helix 79	AI7	A	2316	2331	Right-handed alpha
Helix 80	AI8	A	2332	2348	Right-handed alpha
Helix 81	AI9	A	2358	2364	Right-handed alpha
Helix 82	AJ1	A	2365	2376	Right-handed alpha
Helix 83	AJ2	A	2391	2396	Right-handed alpha
Helix 84	AJ3	A	2397	2401	Right-handed 310
Helix 85	AJ4	A	2407	2418	Right-handed alpha
Helix 86	AJ5	A	2444	2460	Right-handed alpha
Helix 87	AJ6	A	2462	2467	Right-handed 310
Helix 88	AJ7	A	2497	2512	Right-handed alpha
Helix 89	AJ8	A	2542	2562	Right-handed alpha
Helix 90	AJ9	A	2564	2585	Right-handed alpha
Helix 91	AK1	A	2614	2625	Right-handed alpha
Helix 92	AK2	A	2628	2644	Right-handed alpha
Helix 93	AK3	A	2666	2671	Right-handed 310
Helix 94	AK4	A	2682	2697	Right-handed alpha
Helix 95	AK5	A	2698	2710	Right-handed alpha
Helix 96	AK6	A	2753	2764	Right-handed alpha

There are 24 sheets in PDB entry 8RF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	569	first strand
Strand 2	A	520	526	parallel
Strand 3	A	487	492	parallel
Strand 4	A	619	621	parallel
Strand 5	A	716	718	anti-parallel
Strand 6	A	663	664	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	756	757	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1024	1025	first strand
Strand 2	A	1476	1477	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1087	1088	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1281	1283	anti-parallel
Strand 3	A	1288	1289	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1326	1328	first strand
Strand 2	A	1333	1335	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1420	first strand
Strand 2	A	1458	1459	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1449	1450	first strand
Strand 2	A	1453	1454	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1549	1550	first strand
Strand 2	A	1627	1631	anti-parallel
Strand 3	A	1637	1643	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1807	anti-parallel
Strand 7	A	1731	1734	anti-parallel
Strand 8	A	1714	1717	anti-parallel
Strand 9	A	1707	1708	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1561	1564	first strand
Strand 2	A	1568	1572	anti-parallel
Strand 3	A	1578	1582	anti-parallel
Strand 4	A	1585	1586	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1613	1615	first strand
Strand 2	A	1602	1607	anti-parallel
Strand 3	A	1675	1682	anti-parallel
Strand 4	A	1787	1793	anti-parallel
Strand 5	A	1746	1747	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1968	1972	first strand
Strand 2	A	1930	1934	parallel
Strand 3	A	1898	1902	parallel
Strand 4	A	1990	1993	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2060	2065	anti-parallel
Strand 3	A	2145	2150	anti-parallel
Strand 4	A	2155	2161	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2309	2315	anti-parallel
Strand 8	A	2240	2246	anti-parallel
Strand 9	A	2226	2230	anti-parallel
Strand 10	A	2217	2221	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2060	2065	anti-parallel
Strand 3	A	2145	2150	anti-parallel
Strand 4	A	2155	2161	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2304	2306	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2075	2080	first strand
Strand 2	A	2083	2088	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2193	2202	anti-parallel
Strand 3	A	2290	2291	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2193	2202	anti-parallel
Strand 3	A	2295	2299	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2350	2352	first strand
Strand 2	A	2788	2794	anti-parallel
Strand 3	A	2797	2803	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2389	2390	first strand
Strand 2	A	2429	2430	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2439	2440	first strand
Strand 2	A	2484	2485	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2470	2474	first strand
Strand 2	A	2490	2496	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2540	2541	first strand
Strand 2	A	2595	2596	anti-parallel
Strand 3	A	2602	2603	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2732	2735	first strand
Strand 2	A	2745	2748	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2768	2770	first strand
Strand 2	A	2775	2777	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF0