Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RF1 entry

There are 2 chains in PDB entry 8RF1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10ASN 581
B
 SER 10ASN 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8RF1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
21 24Right-handed 310
Helix 3
AA3
A
25 60Right-handed alpha
Helix 4
AA4
A
64 110Right-handed alpha
Helix 5
AA5
A
111 116Right-handed alpha
Helix 6
AA6
A
119 140Right-handed alpha
Helix 7
AA7
A
140 163Right-handed alpha
Helix 8
AA8
A
167 179Right-handed alpha
Helix 9
AA9
A
180 210Right-handed alpha
Helix 10
AB1
A
212 220Right-handed alpha
Helix 11
AB2
A
221 272Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
279 322Right-handed alpha
Helix 14
AB5
A
325 331Right-handed alpha
Helix 15
AB6
A
378 388Right-handed alpha
Helix 16
AB7
A
404 408Right-handed 310
Helix 17
AB8
A
411 418Right-handed alpha
Helix 18
AB9
A
430 436Right-handed alpha
Helix 19
AC1
A
447 455Right-handed alpha
Helix 20
AC2
A
457 461Right-handed 310
Helix 21
AC3
A
462 468Right-handed alpha
Helix 22
AC4
A
480 496Right-handed alpha
Helix 23
AC5
A
508 510Right-handed 310
Helix 24
AC6
A
511 526Right-handed alpha
Helix 25
AC7
A
560 571Right-handed alpha
Helix 26
AC8
A
571 578Right-handed alpha
Helix 27
AC9
B
11 20Right-handed alpha
Helix 28
AD1
B
25 60Right-handed alpha
Helix 29
AD2
B
64 108Right-handed alpha
Helix 30
AD3
B
111 119Right-handed alpha
Helix 31
AD4
B
120 139Right-handed alpha
Helix 32
AD5
B
140 163Right-handed alpha
Helix 33
AD6
B
164 210Right-handed alpha
Helix 34
AD7
B
212 220Right-handed alpha
Helix 35
AD8
B
221 276Right-handed alpha
Helix 36
AD9
B
279 295Right-handed alpha
Helix 37
AE1
B
295 321Right-handed alpha
Helix 38
AE2
B
379 388Right-handed alpha
Helix 39
AE3
B
409 416Right-handed alpha
Helix 40
AE4
B
430 436Right-handed alpha
Helix 41
AE5
B
437 440Right-handed 310
Helix 42
AE6
B
448 452Right-handed 310
Helix 43
AE7
B
458 463Right-handed alpha
Helix 44
AE8
B
480 496Right-handed alpha
Helix 45
AE9
B
508 512Right-handed 310
Helix 46
AF1
B
513 525Right-handed alpha
Helix 47
AF2
B
536 541Right-handed alpha
Helix 48
AF3
B
560 568Right-handed alpha
Helix 49
AF4
B
571 580Right-handed alpha
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There are 4 sheets in PDB entry 8RF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 364first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
395 399anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 502first strand
Strand 2
A
530 533parallel
Strand 3
A
369 373parallel
Strand 4
A
545 550parallel
Strand 5
A
553 554anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 364first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
397 399anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 421first strand
Strand 2
B
500 503parallel
Strand 3
B
530 533parallel
Strand 4
B
369 373parallel
Strand 5
B
545 549parallel
Strand 6
B
554 559anti-parallel
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