Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RF7 entry

There are 2 chains in PDB entry 8RF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASN 342
B
 ALA 2PRO 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8RF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed alpha
Helix 2
AA2
A
44 53Right-handed alpha
Helix 3
AA3
A
63 77Right-handed alpha
Helix 4
AA4
A
91 104Right-handed alpha
Helix 5
AA5
A
136 141Right-handed 310
Helix 6
AA6
A
143 149Right-handed alpha
Helix 7
AA7
A
149 159Right-handed alpha
Helix 8
AA8
A
167 172Right-handed alpha
Helix 9
AA9
A
172 186Right-handed alpha
Helix 10
AB1
A
200 211Right-handed alpha
Helix 11
AB2
A
212 214Right-handed 310
Helix 12
AB3
A
221 231Right-handed alpha
Helix 13
AB4
A
237 247Right-handed alpha
Helix 14
AB5
A
294 309Right-handed alpha
Helix 15
AB6
A
312 329Right-handed alpha
Helix 16
AB7
B
23 30Right-handed alpha
Helix 17
AB8
B
44 53Right-handed alpha
Helix 18
AB9
B
63 77Right-handed alpha
Helix 19
AC1
B
91 104Right-handed alpha
Helix 20
AC2
B
136 142Right-handed 310
Helix 21
AC3
B
143 149Right-handed alpha
Helix 22
AC4
B
149 159Right-handed alpha
Helix 23
AC5
B
166 171Right-handed 310
Helix 24
AC6
B
172 186Right-handed alpha
Helix 25
AC7
B
200 211Right-handed alpha
Helix 26
AC8
B
212 214Right-handed 310
Helix 27
AC9
B
221 231Right-handed alpha
Helix 28
AD1
B
237 247Right-handed alpha
Helix 29
AD2
B
295 309Right-handed alpha
Helix 30
AD3
B
312 329Right-handed alpha
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There are 4 sheets in PDB entry 8RF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 113first strand
Strand 2
A
82 89parallel
Strand 3
A
8 11parallel
Strand 4
A
161 164parallel
Strand 5
A
189 193parallel
Strand 6
A
216 220parallel
Strand 7
A
258 263parallel
Strand 8
A
266 272anti-parallel
Strand 9
A
275 279anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
129 135parallel
Strand 3
A
120 126anti-parallel
Strand 4
A
15 21parallel
Strand 5
A
58 62anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 113first strand
Strand 2
B
82 89parallel
Strand 3
B
8 11parallel
Strand 4
B
161 164parallel
Strand 5
B
189 193parallel
Strand 6
B
216 220parallel
Strand 7
B
258 263parallel
Strand 8
B
266 272anti-parallel
Strand 9
B
275 279anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
129 135parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
15 21parallel
Strand 5
B
58 62anti-parallel
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