Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RF9 entry

There is 1 chain in PDB entry 8RF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	GLY 2680

There are 95 helices in PDB entry 8RF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	46	Right-handed alpha
Helix 2	AA2	A	57	79	Right-handed alpha
Helix 3	AA3	A	87	96	Right-handed alpha
Helix 4	AA4	A	96	105	Right-handed alpha
Helix 5	AA5	A	112	119	Right-handed alpha
Helix 6	AA6	A	123	127	Right-handed 310
Helix 7	AA7	A	130	142	Right-handed alpha
Helix 8	AA8	A	148	161	Right-handed alpha
Helix 9	AA9	A	168	212	Right-handed alpha
Helix 10	AB1	A	216	225	Right-handed alpha
Helix 11	AB2	A	226	231	Right-handed 310
Helix 12	AB3	A	233	245	Right-handed alpha
Helix 13	AB4	A	251	262	Right-handed alpha
Helix 14	AB5	A	263	265	Right-handed 310
Helix 15	AB6	A	268	276	Right-handed alpha
Helix 16	AB7	A	278	298	Right-handed alpha
Helix 17	AB8	A	300	308	Right-handed alpha
Helix 18	AB9	A	308	316	Right-handed alpha
Helix 19	AC1	A	318	323	Right-handed 310
Helix 20	AC2	A	325	341	Right-handed alpha
Helix 21	AC3	A	345	359	Right-handed alpha
Helix 22	AC4	A	373	378	Right-handed alpha
Helix 23	AC5	A	381	390	Right-handed alpha
Helix 24	AC6	A	394	407	Right-handed alpha
Helix 25	AC7	A	408	431	Right-handed alpha
Helix 26	AC8	A	432	434	Right-handed 310
Helix 27	AC9	A	439	467	Right-handed alpha
Helix 28	AD1	A	499	515	Right-handed alpha
Helix 29	AD2	A	539	557	Right-handed alpha
Helix 30	AD3	A	587	599	Right-handed alpha
Helix 31	AD4	A	633	643	Right-handed alpha
Helix 32	AD5	A	679	686	Right-handed alpha
Helix 33	AD6	A	702	707	Right-handed alpha
Helix 34	AD7	A	719	730	Right-handed alpha
Helix 35	AD8	A	737	746	Right-handed alpha
Helix 36	AD9	A	765	782	Right-handed alpha
Helix 37	AE1	A	782	787	Right-handed alpha
Helix 38	AE2	A	793	821	Right-handed alpha
Helix 39	AE3	A	828	850	Right-handed alpha
Helix 40	AE4	A	867	907	Right-handed alpha
Helix 41	AE5	A	913	917	Right-handed 310
Helix 42	AE6	A	927	935	Right-handed alpha
Helix 43	AE7	A	937	951	Right-handed alpha
Helix 44	AE8	A	956	969	Right-handed alpha
Helix 45	AE9	A	969	978	Right-handed alpha
Helix 46	AF1	A	991	1005	Right-handed alpha
Helix 47	AF2	A	1005	1012	Right-handed alpha
Helix 48	AF3	A	1037	1055	Right-handed alpha
Helix 49	AF4	A	1058	1076	Right-handed alpha
Helix 50	AF5	A	1102	1125	Right-handed alpha
Helix 51	AF6	A	1135	1149	Right-handed alpha
Helix 52	AF7	A	1159	1182	Right-handed alpha
Helix 53	AF8	A	1187	1211	Right-handed alpha
Helix 54	AF9	A	1213	1238	Right-handed alpha
Helix 55	AG1	A	1244	1264	Right-handed alpha
Helix 56	AG2	A	1267	1271	Right-handed 310
Helix 57	AG3	A	1300	1312	Right-handed alpha
Helix 58	AG4	A	1316	1322	Right-handed alpha
Helix 59	AG5	A	1347	1351	Right-handed 310
Helix 60	AG6	A	1358	1379	Right-handed alpha
Helix 61	AG7	A	1405	1409	Right-handed 310
Helix 62	AG8	A	1413	1417	Right-handed 310
Helix 63	AG9	A	1421	1429	Right-handed alpha
Helix 64	AH1	A	1432	1446	Right-handed alpha
Helix 65	AH2	A	1479	1494	Right-handed alpha
Helix 66	AH3	A	1496	1503	Right-handed alpha
Helix 67	AH4	A	1505	1512	Right-handed alpha
Helix 68	AH5	A	1513	1515	Right-handed 310
Helix 69	AH6	A	1696	1701	Right-handed alpha
Helix 70	AH7	A	1810	1822	Right-handed alpha
Helix 71	AH8	A	1830	1845	Right-handed alpha
Helix 72	AH9	A	1848	1864	Right-handed alpha
Helix 73	AI1	A	1909	1924	Right-handed alpha
Helix 74	AI2	A	1937	1957	Right-handed alpha
Helix 75	AI3	A	1977	1988	Right-handed alpha
Helix 76	AI4	A	2001	2010	Right-handed alpha
Helix 77	AI5	A	2135	2139	Right-handed 310
Helix 78	AI6	A	2212	2216	Right-handed 310
Helix 79	AI7	A	2256	2261	Right-handed alpha
Helix 80	AI8	A	2316	2330	Right-handed alpha
Helix 81	AI9	A	2332	2348	Right-handed alpha
Helix 82	AJ1	A	2359	2364	Right-handed alpha
Helix 83	AJ2	A	2365	2374	Right-handed alpha
Helix 84	AJ3	A	2391	2398	Right-handed alpha
Helix 85	AJ4	A	2399	2401	Right-handed 310
Helix 86	AJ5	A	2407	2417	Right-handed alpha
Helix 87	AJ6	A	2418	2420	Right-handed 310
Helix 88	AJ7	A	2444	2461	Right-handed alpha
Helix 89	AJ8	A	2462	2467	Right-handed 310
Helix 90	AJ9	A	2497	2512	Right-handed alpha
Helix 91	AK1	A	2542	2563	Right-handed alpha
Helix 92	AK2	A	2564	2586	Right-handed alpha
Helix 93	AK3	A	2614	2624	Right-handed alpha
Helix 94	AK4	A	2628	2640	Right-handed alpha
Helix 95	AK5	A	2666	2671	Right-handed 310

There are 20 sheets in PDB entry 8RF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	569	first strand
Strand 2	A	520	526	parallel
Strand 3	A	487	490	parallel
Strand 4	A	619	621	parallel
Strand 5	A	716	718	anti-parallel
Strand 6	A	663	670	anti-parallel
Strand 7	A	748	758	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1025	first strand
Strand 2	A	1476	1478	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1087	1088	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1281	1283	anti-parallel
Strand 3	A	1288	1289	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1278	1279	first strand
Strand 2	A	1293	1294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1326	1328	first strand
Strand 2	A	1333	1335	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1387	1388	first strand
Strand 2	A	1400	1401	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1420	first strand
Strand 2	A	1457	1459	anti-parallel
Strand 3	A	1472	1474	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1449	1450	first strand
Strand 2	A	1453	1454	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1549	1550	first strand
Strand 2	A	1627	1631	anti-parallel
Strand 3	A	1637	1643	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1807	anti-parallel
Strand 7	A	1731	1734	anti-parallel
Strand 8	A	1714	1717	anti-parallel
Strand 9	A	1707	1708	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1549	1550	first strand
Strand 2	A	1627	1631	anti-parallel
Strand 3	A	1637	1643	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1807	anti-parallel
Strand 7	A	1737	1738	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1561	1564	first strand
Strand 2	A	1568	1572	anti-parallel
Strand 3	A	1578	1582	anti-parallel
Strand 4	A	1585	1588	anti-parallel
Strand 5	A	1685	1688	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1613	1615	first strand
Strand 2	A	1602	1607	anti-parallel
Strand 3	A	1677	1682	anti-parallel
Strand 4	A	1787	1790	anti-parallel
Strand 5	A	1746	1747	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1901	1902	first strand
Strand 2	A	1930	1934	parallel
Strand 3	A	1968	1972	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2059	2065	anti-parallel
Strand 3	A	2145	2151	anti-parallel
Strand 4	A	2155	2161	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2304	2315	anti-parallel
Strand 8	A	2240	2246	anti-parallel
Strand 9	A	2226	2230	anti-parallel
Strand 10	A	2217	2221	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2076	2079	first strand
Strand 2	A	2084	2087	anti-parallel
Strand 3	A	2095	2096	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2119	2122	first strand
Strand 2	A	2194	2202	anti-parallel
Strand 3	A	2290	2298	anti-parallel
Strand 4	A	2252	2254	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2389	2390	first strand
Strand 2	A	2427	2430	anti-parallel
Strand 3	A	2437	2440	anti-parallel
Strand 4	A	2484	2485	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2470	2474	first strand
Strand 2	A	2490	2496	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2540	2541	first strand
Strand 2	A	2595	2596	anti-parallel
Strand 3	A	2602	2603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RF9