Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RFB entry

There is 1 chain in PDB entry 8RFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 111ASP 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8RFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 152Right-handed 310
Helix 2
AA2
A
333 337Right-handed 310
Helix 3
AA3
A
436 440Right-handed alpha
Helix 4
AA4
A
491 501Right-handed alpha
Helix 5
AA5
A
516 522Right-handed alpha
Helix 6
AA6
A
527 546Right-handed alpha
Helix 7
AA7
A
549 551Right-handed 310
Helix 8
AA8
A
561 572Right-handed alpha
Helix 9
AA9
A
573 576Right-handed 310
Helix 10
AB1
A
587 593Right-handed alpha
Helix 11
AB2
A
600 605Right-handed alpha
Helix 12
AB3
A
613 624Right-handed alpha
Helix 13
AB4
A
649 672Right-handed alpha
Helix 14
AB5
A
695 711Right-handed alpha
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There are 9 sheets in PDB entry 8RFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
120 125anti-parallel
Strand 3
A
128 132anti-parallel
Strand 4
A
142 147anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 163first strand
Strand 2
A
169 175anti-parallel
Strand 3
A
183 188anti-parallel
Strand 4
A
195 200anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 209first strand
Strand 2
A
215 223anti-parallel
Strand 3
A
227 234anti-parallel
Strand 4
A
240 246anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
275 281anti-parallel
Strand 4
A
290 293anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
309 314anti-parallel
Strand 3
A
323 328anti-parallel
Strand 4
A
338 342anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
358 365anti-parallel
Strand 3
A
368 375anti-parallel
Strand 4
A
381 383anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
404 410anti-parallel
Strand 3
A
413 420anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 445first strand
Strand 2
A
458 463anti-parallel
Strand 3
A
503 507anti-parallel
Strand 4
A
474 478parallel
Strand 5
A
553 558parallel
Strand 6
A
578 582parallel
Strand 7
A
636 642parallel
Strand 8
A
680 685parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
455 456anti-parallel
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