Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RFE entry

There is 1 chain in PDB entry 8RFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	GLY 2818

There are104 helices in PDB entry 8RFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	45	Right-handed alpha
Helix 2	AA2	A	57	79	Right-handed alpha
Helix 3	AA3	A	90	96	Right-handed alpha
Helix 4	AA4	A	96	104	Right-handed alpha
Helix 5	AA5	A	123	127	Right-handed 310
Helix 6	AA6	A	130	142	Right-handed alpha
Helix 7	AA7	A	148	161	Right-handed alpha
Helix 8	AA8	A	172	212	Right-handed alpha
Helix 9	AA9	A	215	226	Right-handed alpha
Helix 10	AB1	A	227	229	Right-handed 310
Helix 11	AB2	A	231	233	Right-handed 310
Helix 12	AB3	A	234	244	Right-handed alpha
Helix 13	AB4	A	251	262	Right-handed alpha
Helix 14	AB5	A	263	265	Right-handed 310
Helix 15	AB6	A	267	274	Right-handed alpha
Helix 16	AB7	A	278	298	Right-handed alpha
Helix 17	AB8	A	300	308	Right-handed alpha
Helix 18	AB9	A	308	315	Right-handed alpha
Helix 19	AC1	A	318	322	Right-handed 310
Helix 20	AC2	A	324	342	Right-handed alpha
Helix 21	AC3	A	345	359	Right-handed alpha
Helix 22	AC4	A	373	378	Right-handed alpha
Helix 23	AC5	A	381	390	Right-handed alpha
Helix 24	AC6	A	394	406	Right-handed alpha
Helix 25	AC7	A	408	430	Right-handed alpha
Helix 26	AC8	A	439	448	Right-handed alpha
Helix 27	AC9	A	449	467	Right-handed alpha
Helix 28	AD1	A	500	515	Right-handed alpha
Helix 29	AD2	A	538	557	Right-handed alpha
Helix 30	AD3	A	586	599	Right-handed alpha
Helix 31	AD4	A	633	643	Right-handed alpha
Helix 32	AD5	A	644	647	Right-handed 310
Helix 33	AD6	A	700	705	Right-handed alpha
Helix 34	AD7	A	719	728	Right-handed alpha
Helix 35	AD8	A	737	745	Right-handed alpha
Helix 36	AD9	A	763	777	Right-handed alpha
Helix 37	AE1	A	781	787	Right-handed alpha
Helix 38	AE2	A	793	824	Right-handed alpha
Helix 39	AE3	A	828	849	Right-handed alpha
Helix 40	AE4	A	850	852	Right-handed 310
Helix 41	AE5	A	867	885	Right-handed alpha
Helix 42	AE6	A	885	903	Right-handed alpha
Helix 43	AE7	A	927	936	Right-handed alpha
Helix 44	AE8	A	937	951	Right-handed alpha
Helix 45	AE9	A	956	969	Right-handed alpha
Helix 46	AF1	A	969	979	Right-handed alpha
Helix 47	AF2	A	991	1005	Right-handed alpha
Helix 48	AF3	A	1005	1011	Right-handed alpha
Helix 49	AF4	A	1037	1055	Right-handed alpha
Helix 50	AF5	A	1058	1075	Right-handed alpha
Helix 51	AF6	A	1102	1124	Right-handed alpha
Helix 52	AF7	A	1135	1149	Right-handed alpha
Helix 53	AF8	A	1159	1182	Right-handed alpha
Helix 54	AF9	A	1186	1211	Right-handed alpha
Helix 55	AG1	A	1215	1237	Right-handed alpha
Helix 56	AG2	A	1244	1264	Right-handed alpha
Helix 57	AG3	A	1267	1271	Right-handed 310
Helix 58	AG4	A	1300	1311	Right-handed alpha
Helix 59	AG5	A	1316	1321	Right-handed alpha
Helix 60	AG6	A	1342	1345	Right-handed 310
Helix 61	AG7	A	1346	1352	Right-handed alpha
Helix 62	AG8	A	1358	1379	Right-handed alpha
Helix 63	AG9	A	1405	1409	Right-handed 310
Helix 64	AH1	A	1421	1428	Right-handed alpha
Helix 65	AH2	A	1432	1445	Right-handed alpha
Helix 66	AH3	A	1461	1465	Right-handed 310
Helix 67	AH4	A	1479	1494	Right-handed alpha
Helix 68	AH5	A	1496	1503	Right-handed alpha
Helix 69	AH6	A	1505	1513	Right-handed alpha
Helix 70	AH7	A	1537	1542	Right-handed alpha
Helix 71	AH8	A	1690	1696	Right-handed alpha
Helix 72	AH9	A	1696	1703	Right-handed alpha
Helix 73	AI1	A	1751	1756	Right-handed alpha
Helix 74	AI2	A	1764	1768	Right-handed 310
Helix 75	AI3	A	1813	1823	Right-handed alpha
Helix 76	AI4	A	1829	1845	Right-handed alpha
Helix 77	AI5	A	1848	1864	Right-handed alpha
Helix 78	AI6	A	1874	1878	Right-handed 310
Helix 79	AI7	A	1882	1887	Right-handed 310
Helix 80	AI8	A	1909	1925	Right-handed alpha
Helix 81	AI9	A	1940	1953	Right-handed alpha
Helix 82	AJ1	A	1977	1988	Right-handed alpha
Helix 83	AJ2	A	2001	2010	Right-handed alpha
Helix 84	AJ3	A	2212	2216	Right-handed 310
Helix 85	AJ4	A	2256	2261	Right-handed alpha
Helix 86	AJ5	A	2316	2330	Right-handed alpha
Helix 87	AJ6	A	2332	2348	Right-handed alpha
Helix 88	AJ7	A	2358	2363	Right-handed alpha
Helix 89	AJ8	A	2365	2375	Right-handed alpha
Helix 90	AJ9	A	2391	2398	Right-handed alpha
Helix 91	AK1	A	2407	2418	Right-handed alpha
Helix 92	AK2	A	2443	2460	Right-handed alpha
Helix 93	AK3	A	2463	2467	Right-handed 310
Helix 94	AK4	A	2497	2512	Right-handed alpha
Helix 95	AK5	A	2542	2563	Right-handed alpha
Helix 96	AK6	A	2564	2585	Right-handed alpha
Helix 97	AK7	A	2615	2625	Right-handed alpha
Helix 98	AK8	A	2628	2640	Right-handed alpha
Helix 99	AK9	A	2641	2644	Right-handed 310
Helix 100	AL1	A	2667	2671	Right-handed 310
Helix 101	AL2	A	2683	2697	Right-handed alpha
Helix 102	AL3	A	2698	2710	Right-handed alpha
Helix 103	AL4	A	2738	2742	Right-handed 310
Helix 104	AL5	A	2753	2764	Right-handed alpha

There are 22 sheets in PDB entry 8RFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	569	first strand
Strand 2	A	520	526	parallel
Strand 3	A	487	493	parallel
Strand 4	A	619	621	parallel
Strand 5	A	716	717	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	756	757	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	665	first strand
Strand 2	A	748	750	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1025	first strand
Strand 2	A	1476	1478	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1087	1088	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1281	1283	anti-parallel
Strand 3	A	1288	1289	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1326	1329	first strand
Strand 2	A	1332	1335	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1420	first strand
Strand 2	A	1458	1459	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1449	1450	first strand
Strand 2	A	1453	1454	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1550	first strand
Strand 2	A	1627	1632	anti-parallel
Strand 3	A	1637	1642	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1808	anti-parallel
Strand 7	A	1730	1734	anti-parallel
Strand 8	A	1714	1718	anti-parallel
Strand 9	A	1705	1708	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1560	1564	first strand
Strand 2	A	1569	1573	anti-parallel
Strand 3	A	1580	1582	anti-parallel
Strand 4	A	1585	1588	anti-parallel
Strand 5	A	1685	1688	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1613	1615	first strand
Strand 2	A	1602	1607	anti-parallel
Strand 3	A	1675	1683	anti-parallel
Strand 4	A	1785	1793	anti-parallel
Strand 5	A	1746	1747	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1968	1972	first strand
Strand 2	A	1930	1934	parallel
Strand 3	A	1898	1902	parallel
Strand 4	A	1991	1993	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2060	2065	anti-parallel
Strand 3	A	2145	2150	anti-parallel
Strand 4	A	2154	2161	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2304	2315	anti-parallel
Strand 8	A	2240	2246	anti-parallel
Strand 9	A	2226	2230	anti-parallel
Strand 10	A	2217	2220	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2076	2080	first strand
Strand 2	A	2083	2087	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2119	2120	first strand
Strand 2	A	2193	2202	anti-parallel
Strand 3	A	2290	2299	anti-parallel
Strand 4	A	2252	2254	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2351	2352	first strand
Strand 2	A	2788	2794	anti-parallel
Strand 3	A	2797	2803	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2389	2390	first strand
Strand 2	A	2429	2430	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2473	2474	first strand
Strand 2	A	2490	2491	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2540	2541	first strand
Strand 2	A	2595	2596	anti-parallel
Strand 3	A	2602	2603	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2681	2682	first strand
Strand 2	A	2732	2736	anti-parallel
Strand 3	A	2744	2748	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2768	2770	first strand
Strand 2	A	2775	2777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFE