Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RFG entry

There is 1 chain in PDB entry 8RFG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	GLY 2818

There are 94 helices in PDB entry 8RFG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	46	Right-handed alpha
Helix 2	AA2	A	57	79	Right-handed alpha
Helix 3	AA3	A	87	95	Right-handed alpha
Helix 4	AA4	A	97	105	Right-handed alpha
Helix 5	AA5	A	112	117	Right-handed alpha
Helix 6	AA6	A	123	127	Right-handed 310
Helix 7	AA7	A	130	143	Right-handed alpha
Helix 8	AA8	A	148	161	Right-handed alpha
Helix 9	AA9	A	168	212	Right-handed alpha
Helix 10	AB1	A	215	226	Right-handed alpha
Helix 11	AB2	A	227	229	Right-handed 310
Helix 12	AB3	A	231	244	Right-handed alpha
Helix 13	AB4	A	251	262	Right-handed alpha
Helix 14	AB5	A	267	274	Right-handed alpha
Helix 15	AB6	A	277	298	Right-handed alpha
Helix 16	AB7	A	301	308	Right-handed alpha
Helix 17	AB8	A	310	315	Right-handed alpha
Helix 18	AB9	A	323	341	Right-handed alpha
Helix 19	AC1	A	345	360	Right-handed alpha
Helix 20	AC2	A	373	378	Right-handed alpha
Helix 21	AC3	A	381	389	Right-handed alpha
Helix 22	AC4	A	394	406	Right-handed alpha
Helix 23	AC5	A	408	430	Right-handed alpha
Helix 24	AC6	A	438	467	Right-handed alpha
Helix 25	AC7	A	499	515	Right-handed alpha
Helix 26	AC8	A	539	557	Right-handed alpha
Helix 27	AC9	A	586	599	Right-handed alpha
Helix 28	AD1	A	632	643	Right-handed alpha
Helix 29	AD2	A	644	647	Right-handed 310
Helix 30	AD3	A	702	707	Right-handed alpha
Helix 31	AD4	A	719	728	Right-handed alpha
Helix 32	AD5	A	737	746	Right-handed alpha
Helix 33	AD6	A	763	780	Right-handed alpha
Helix 34	AD7	A	781	787	Right-handed alpha
Helix 35	AD8	A	793	823	Right-handed alpha
Helix 36	AD9	A	828	851	Right-handed alpha
Helix 37	AE1	A	868	906	Right-handed alpha
Helix 38	AE2	A	927	935	Right-handed alpha
Helix 39	AE3	A	937	951	Right-handed alpha
Helix 40	AE4	A	956	969	Right-handed alpha
Helix 41	AE5	A	969	979	Right-handed alpha
Helix 42	AE6	A	991	1005	Right-handed alpha
Helix 43	AE7	A	1005	1011	Right-handed alpha
Helix 44	AE8	A	1037	1055	Right-handed alpha
Helix 45	AE9	A	1058	1075	Right-handed alpha
Helix 46	AF1	A	1102	1124	Right-handed alpha
Helix 47	AF2	A	1135	1150	Right-handed alpha
Helix 48	AF3	A	1159	1182	Right-handed alpha
Helix 49	AF4	A	1188	1211	Right-handed alpha
Helix 50	AF5	A	1215	1237	Right-handed alpha
Helix 51	AF6	A	1244	1264	Right-handed alpha
Helix 52	AF7	A	1300	1312	Right-handed alpha
Helix 53	AF8	A	1316	1322	Right-handed alpha
Helix 54	AF9	A	1347	1351	Right-handed 310
Helix 55	AG1	A	1358	1379	Right-handed alpha
Helix 56	AG2	A	1405	1409	Right-handed 310
Helix 57	AG3	A	1421	1428	Right-handed alpha
Helix 58	AG4	A	1429	1431	Right-handed 310
Helix 59	AG5	A	1432	1445	Right-handed alpha
Helix 60	AG6	A	1461	1465	Right-handed 310
Helix 61	AG7	A	1478	1494	Right-handed alpha
Helix 62	AG8	A	1496	1504	Right-handed alpha
Helix 63	AG9	A	1505	1513	Right-handed alpha
Helix 64	AH1	A	1537	1541	Right-handed alpha
Helix 65	AH2	A	1690	1696	Right-handed alpha
Helix 66	AH3	A	1696	1703	Right-handed alpha
Helix 67	AH4	A	1760	1768	Right-handed 310
Helix 68	AH5	A	1810	1823	Right-handed alpha
Helix 69	AH6	A	1830	1845	Right-handed alpha
Helix 70	AH7	A	1848	1864	Right-handed alpha
Helix 71	AH8	A	1872	1878	Right-handed alpha
Helix 72	AH9	A	1909	1925	Right-handed alpha
Helix 73	AI1	A	1940	1957	Right-handed alpha
Helix 74	AI2	A	1977	1988	Right-handed alpha
Helix 75	AI3	A	2001	2010	Right-handed alpha
Helix 76	AI4	A	2135	2139	Right-handed 310
Helix 77	AI5	A	2256	2261	Right-handed alpha
Helix 78	AI6	A	2316	2330	Right-handed alpha
Helix 79	AI7	A	2332	2348	Right-handed alpha
Helix 80	AI8	A	2356	2364	Right-handed alpha
Helix 81	AI9	A	2365	2376	Right-handed alpha
Helix 82	AJ1	A	2391	2398	Right-handed alpha
Helix 83	AJ2	A	2407	2418	Right-handed alpha
Helix 84	AJ3	A	2444	2460	Right-handed alpha
Helix 85	AJ4	A	2462	2467	Right-handed 310
Helix 86	AJ5	A	2497	2512	Right-handed alpha
Helix 87	AJ6	A	2542	2563	Right-handed alpha
Helix 88	AJ7	A	2564	2585	Right-handed alpha
Helix 89	AJ8	A	2615	2624	Right-handed alpha
Helix 90	AJ9	A	2628	2644	Right-handed alpha
Helix 91	AK1	A	2666	2671	Right-handed 310
Helix 92	AK2	A	2683	2697	Right-handed alpha
Helix 93	AK3	A	2698	2710	Right-handed alpha
Helix 94	AK4	A	2752	2764	Right-handed alpha

There are 21 sheets in PDB entry 8RFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	569	first strand
Strand 2	A	520	526	parallel
Strand 3	A	487	492	parallel
Strand 4	A	619	621	parallel
Strand 5	A	716	718	anti-parallel
Strand 6	A	663	670	anti-parallel
Strand 7	A	748	758	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	580	581	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1035	1036	first strand
Strand 2	A	1087	1088	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1099	1101	first strand
Strand 2	A	1281	1283	anti-parallel
Strand 3	A	1288	1289	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1327	1329	first strand
Strand 2	A	1332	1334	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1419	1420	first strand
Strand 2	A	1458	1459	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1550	first strand
Strand 2	A	1629	1632	anti-parallel
Strand 3	A	1637	1640	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1807	anti-parallel
Strand 7	A	1731	1734	anti-parallel
Strand 8	A	1714	1718	anti-parallel
Strand 9	A	1705	1707	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1550	first strand
Strand 2	A	1629	1632	anti-parallel
Strand 3	A	1637	1640	anti-parallel
Strand 4	A	1646	1654	anti-parallel
Strand 5	A	1660	1669	anti-parallel
Strand 6	A	1798	1807	anti-parallel
Strand 7	A	1737	1738	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1560	1564	first strand
Strand 2	A	1568	1573	anti-parallel
Strand 3	A	1580	1582	anti-parallel
Strand 4	A	1585	1588	anti-parallel
Strand 5	A	1685	1688	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1613	1615	first strand
Strand 2	A	1602	1607	anti-parallel
Strand 3	A	1677	1682	anti-parallel
Strand 4	A	1787	1790	anti-parallel
Strand 5	A	1746	1747	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1968	1969	first strand
Strand 2	A	1930	1934	parallel
Strand 3	A	1898	1902	parallel
Strand 4	A	1990	1993	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2060	2064	anti-parallel
Strand 3	A	2145	2150	anti-parallel
Strand 4	A	2155	2160	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2309	2315	anti-parallel
Strand 8	A	2240	2246	anti-parallel
Strand 9	A	2226	2230	anti-parallel
Strand 10	A	2217	2221	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2051	2053	first strand
Strand 2	A	2060	2064	anti-parallel
Strand 3	A	2145	2150	anti-parallel
Strand 4	A	2155	2160	anti-parallel
Strand 5	A	2164	2172	anti-parallel
Strand 6	A	2178	2187	anti-parallel
Strand 7	A	2304	2306	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2076	2080	first strand
Strand 2	A	2083	2087	anti-parallel
Strand 3	A	2095	2096	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2119	2122	first strand
Strand 2	A	2194	2202	anti-parallel
Strand 3	A	2290	2298	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2350	2352	first strand
Strand 2	A	2788	2794	anti-parallel
Strand 3	A	2797	2803	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2389	2390	first strand
Strand 2	A	2429	2430	anti-parallel
Strand 3	A	2437	2438	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2470	2474	first strand
Strand 2	A	2490	2496	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2595	2596	first strand
Strand 2	A	2602	2603	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2681	2682	first strand
Strand 2	A	2732	2735	anti-parallel
Strand 3	A	2745	2748	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2768	2770	first strand
Strand 2	A	2775	2777	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RFG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFG