Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RFH entry

There are 2 chains in PDB entry 8RFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 152	ASP 885
B	ASP 152	ASP 885

There are 62 helices in PDB entry 8RFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	157	170	Right-handed alpha
Helix 2	AA2	A	187	198	Right-handed alpha
Helix 3	AA3	A	198	205	Right-handed alpha
Helix 4	AA4	A	218	229	Right-handed alpha
Helix 5	AA5	A	234	238	Right-handed 310
Helix 6	AA6	A	241	256	Right-handed alpha
Helix 7	AA7	A	268	277	Right-handed alpha
Helix 8	AA8	A	294	301	Right-handed alpha
Helix 9	AA9	A	315	328	Right-handed alpha
Helix 10	AB1	A	334	348	Right-handed alpha
Helix 11	AB2	A	351	366	Right-handed alpha
Helix 12	AB3	A	368	382	Right-handed alpha
Helix 13	AB4	A	389	401	Right-handed alpha
Helix 14	AB5	A	404	415	Right-handed alpha
Helix 15	AB6	A	425	435	Right-handed alpha
Helix 16	AB7	A	445	460	Right-handed alpha
Helix 17	AB8	A	480	494	Right-handed alpha
Helix 18	AB9	A	511	516	Right-handed alpha
Helix 19	AC1	A	526	534	Right-handed alpha
Helix 20	AC2	A	559	565	Right-handed alpha
Helix 21	AC3	A	583	588	Right-handed 310
Helix 22	AC4	A	605	611	Right-handed 310
Helix 23	AC5	A	674	678	Right-handed 310
Helix 24	AC6	A	679	685	Right-handed alpha
Helix 25	AC7	A	697	702	Right-handed alpha
Helix 26	AC8	A	708	715	Right-handed alpha
Helix 27	AC9	A	738	742	Right-handed 310
Helix 28	AD1	A	757	759	Right-handed 310
Helix 29	AD2	A	760	767	Right-handed alpha
Helix 30	AD3	A	832	838	Right-handed 310
Helix 31	AD4	A	850	871	Right-handed alpha
Helix 32	AD5	B	157	170	Right-handed alpha
Helix 33	AD6	B	187	198	Right-handed alpha
Helix 34	AD7	B	198	205	Right-handed alpha
Helix 35	AD8	B	218	229	Right-handed alpha
Helix 36	AD9	B	234	238	Right-handed 310
Helix 37	AE1	B	241	256	Right-handed alpha
Helix 38	AE2	B	268	277	Right-handed alpha
Helix 39	AE3	B	294	301	Right-handed alpha
Helix 40	AE4	B	315	328	Right-handed alpha
Helix 41	AE5	B	334	348	Right-handed alpha
Helix 42	AE6	B	351	366	Right-handed alpha
Helix 43	AE7	B	368	382	Right-handed alpha
Helix 44	AE8	B	389	401	Right-handed alpha
Helix 45	AE9	B	404	415	Right-handed alpha
Helix 46	AF1	B	425	436	Right-handed alpha
Helix 47	AF2	B	445	460	Right-handed alpha
Helix 48	AF3	B	480	494	Right-handed alpha
Helix 49	AF4	B	511	516	Right-handed alpha
Helix 50	AF5	B	526	534	Right-handed alpha
Helix 51	AF6	B	559	565	Right-handed alpha
Helix 52	AF7	B	583	588	Right-handed 310
Helix 53	AF8	B	605	611	Right-handed 310
Helix 54	AF9	B	674	678	Right-handed 310
Helix 55	AG1	B	679	685	Right-handed alpha
Helix 56	AG2	B	697	702	Right-handed alpha
Helix 57	AG3	B	708	715	Right-handed alpha
Helix 58	AG4	B	738	742	Right-handed 310
Helix 59	AG5	B	757	759	Right-handed 310
Helix 60	AG6	B	760	767	Right-handed alpha
Helix 61	AG7	B	832	838	Right-handed 310
Helix 62	AG8	B	850	871	Right-handed alpha

There are 12 sheets in PDB entry 8RFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	212	first strand
Strand 2	A	259	266	parallel
Strand 3	A	287	292	parallel
Strand 4	A	176	181	parallel
Strand 5	A	309	310	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	464	468	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	542	544	parallel
Strand 3	A	570	578	parallel
Strand 4	A	551	552	parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	542	544	parallel
Strand 3	A	570	578	parallel
Strand 4	A	593	598	parallel
Strand 5	A	616	621	parallel
Strand 6	A	640	643	parallel
Strand 7	A	669	673	parallel
Strand 8	A	691	696	parallel
Strand 9	A	720	725	parallel
Strand 10	A	748	752	parallel
Strand 11	A	772	776	parallel
Strand 12	A	796	800	parallel
Strand 13	A	819	823	parallel
Strand 14	A	843	845	parallel
Strand 15	A	878	879	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	604	first strand
Strand 2	A	625	628	parallel
Strand 3	A	646	648	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	806	808	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	212	first strand
Strand 2	B	259	266	parallel
Strand 3	B	287	292	parallel
Strand 4	B	176	181	parallel
Strand 5	B	309	310	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	474	478	anti-parallel
Strand 3	B	464	468	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	542	544	parallel
Strand 3	B	570	578	parallel
Strand 4	B	551	552	parallel

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There are 15 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	542	544	parallel
Strand 3	B	570	578	parallel
Strand 4	B	593	598	parallel
Strand 5	B	616	621	parallel
Strand 6	B	640	643	parallel
Strand 7	B	669	673	parallel
Strand 8	B	691	696	parallel
Strand 9	B	720	725	parallel
Strand 10	B	748	752	parallel
Strand 11	B	772	776	parallel
Strand 12	B	796	800	parallel
Strand 13	B	819	823	parallel
Strand 14	B	843	845	parallel
Strand 15	B	878	879	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	604	first strand
Strand 2	B	625	628	parallel
Strand 3	B	646	648	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	786	first strand
Strand 2	B	806	808	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFH