Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RFJ entry

There are 12 chains in PDB entry 8RFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 343
B	MET 1	LYS 345
C	MET 1	LYS 345
D	MET 1	LYS 345
E	MET 1	LYS 345
F	MET 1	ALA 222
G	MET 1	LEU 240
H	G -7	G 53
I	G -30	T 9
J	A -9	A 22
K	ILE 99	LEU 718
M	MET 1	GLU 236

There are125 helices in PDB entry 8RFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	82	Right-handed alpha
Helix 2	AA2	A	82	90	Right-handed alpha
Helix 3	AA3	A	96	105	Right-handed alpha
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	117	126	Right-handed alpha
Helix 6	AA6	A	153	155	Right-handed 310
Helix 7	AA7	A	156	161	Right-handed alpha
Helix 8	AA8	A	164	168	Right-handed 310
Helix 9	AA9	A	183	188	Right-handed 310
Helix 10	AB1	A	192	196	Right-handed 310
Helix 11	AB2	A	199	221	Right-handed alpha
Helix 12	AB3	A	265	279	Right-handed alpha
Helix 13	AB4	A	280	282	Right-handed 310
Helix 14	AB5	A	318	332	Right-handed alpha
Helix 15	AB6	A	333	341	Right-handed alpha
Helix 16	AB7	B	66	82	Right-handed alpha
Helix 17	AB8	B	82	90	Right-handed alpha
Helix 18	AB9	B	95	105	Right-handed alpha
Helix 19	AC1	B	117	126	Right-handed alpha
Helix 20	AC2	B	129	133	Right-handed alpha
Helix 21	AC3	B	153	155	Right-handed 310
Helix 22	AC4	B	156	161	Right-handed alpha
Helix 23	AC5	B	164	168	Right-handed 310
Helix 24	AC6	B	183	188	Right-handed 310
Helix 25	AC7	B	192	196	Right-handed 310
Helix 26	AC8	B	200	222	Right-handed alpha
Helix 27	AC9	B	265	279	Right-handed alpha
Helix 28	AD1	B	280	282	Right-handed 310
Helix 29	AD2	B	315	317	Right-handed 310
Helix 30	AD3	B	318	331	Right-handed alpha
Helix 31	AD4	B	334	342	Right-handed alpha
Helix 32	AD5	C	66	82	Right-handed alpha
Helix 33	AD6	C	82	90	Right-handed alpha
Helix 34	AD7	C	95	105	Right-handed alpha
Helix 35	AD8	C	117	126	Right-handed alpha
Helix 36	AD9	C	153	155	Right-handed 310
Helix 37	AE1	C	156	161	Right-handed alpha
Helix 38	AE2	C	164	168	Right-handed 310
Helix 39	AE3	C	183	188	Right-handed alpha
Helix 40	AE4	C	192	196	Right-handed 310
Helix 41	AE5	C	200	222	Right-handed alpha
Helix 42	AE6	C	265	278	Right-handed alpha
Helix 43	AE7	C	318	331	Right-handed alpha
Helix 44	AE8	C	334	342	Right-handed alpha
Helix 45	AE9	D	24	28	Right-handed 310
Helix 46	AF1	D	66	82	Right-handed alpha
Helix 47	AF2	D	82	90	Right-handed alpha
Helix 48	AF3	D	95	105	Right-handed alpha
Helix 49	AF4	D	117	126	Right-handed alpha
Helix 50	AF5	D	129	134	Right-handed alpha
Helix 51	AF6	D	156	161	Right-handed alpha
Helix 52	AF7	D	164	168	Right-handed 310
Helix 53	AF8	D	192	197	Right-handed 310
Helix 54	AF9	D	199	214	Right-handed alpha
Helix 55	AG1	D	265	278	Right-handed alpha
Helix 56	AG2	D	279	282	Right-handed 310
Helix 57	AG3	D	315	317	Right-handed 310
Helix 58	AG4	D	318	330	Right-handed alpha
Helix 59	AG5	D	334	342	Right-handed alpha
Helix 60	AG6	E	66	82	Right-handed alpha
Helix 61	AG7	E	82	90	Right-handed alpha
Helix 62	AG8	E	95	105	Right-handed alpha
Helix 63	AG9	E	117	126	Right-handed alpha
Helix 64	AH1	E	129	134	Right-handed alpha
Helix 65	AH2	E	153	155	Right-handed 310
Helix 66	AH3	E	156	161	Right-handed alpha
Helix 67	AH4	E	265	278	Right-handed alpha
Helix 68	AH5	E	279	282	Right-handed 310
Helix 69	AH6	E	288	292	Right-handed 310
Helix 70	AH7	E	318	332	Right-handed alpha
Helix 71	AH8	E	334	342	Right-handed alpha
Helix 72	AH9	F	22	40	Right-handed alpha
Helix 73	AI1	F	44	48	Right-handed 310
Helix 74	AI2	F	89	99	Right-handed alpha
Helix 75	AI3	F	137	147	Right-handed alpha
Helix 76	AI4	F	154	158	Right-handed 310
Helix 77	AI5	F	187	191	Right-handed 310
Helix 78	AI6	F	208	212	Right-handed 310
Helix 79	AI7	G	3	5	Right-handed 310
Helix 80	AI8	G	6	12	Right-handed alpha
Helix 81	AI9	G	54	58	Right-handed 310
Helix 82	AJ1	G	67	73	Right-handed alpha
Helix 83	AJ2	G	74	81	Right-handed alpha
Helix 84	AJ3	G	96	106	Right-handed alpha
Helix 85	AJ4	G	149	164	Right-handed alpha
Helix 86	AJ5	G	189	196	Right-handed alpha
Helix 87	AJ6	G	197	206	Right-handed alpha
Helix 88	AJ7	G	208	219	Right-handed alpha
Helix 89	AJ8	G	232	240	Right-handed alpha
Helix 90	AJ9	K	106	108	Right-handed 310
Helix 91	AK1	K	109	122	Right-handed alpha
Helix 92	AK2	K	135	150	Right-handed alpha
Helix 93	AK3	K	159	171	Right-handed alpha
Helix 94	AK4	K	173	178	Right-handed alpha
Helix 95	AK5	K	193	204	Right-handed alpha
Helix 96	AK6	K	205	215	Right-handed alpha
Helix 97	AK7	K	220	229	Right-handed alpha
Helix 98	AK8	K	237	245	Right-handed alpha
Helix 99	AK9	K	264	269	Right-handed alpha
Helix 100	AL1	K	285	300	Right-handed alpha
Helix 101	AL2	K	330	339	Right-handed alpha
Helix 102	AL3	K	344	355	Right-handed alpha
Helix 103	AL4	K	359	378	Right-handed alpha
Helix 104	AL5	K	396	408	Right-handed alpha
Helix 105	AL6	K	409	411	Right-handed 310
Helix 106	AL7	K	418	419	Right-handed 310
Helix 107	AL8	K	420	436	Right-handed alpha
Helix 108	AL9	K	464	473	Right-handed alpha
Helix 109	AM1	K	489	496	Right-handed alpha
Helix 110	AM2	K	511	516	Right-handed alpha
Helix 111	AM3	K	532	550	Right-handed alpha
Helix 112	AM4	K	560	575	Right-handed alpha
Helix 113	AM5	K	590	601	Right-handed alpha
Helix 114	AM6	K	612	615	Right-handed 310
Helix 115	AM7	K	648	659	Right-handed alpha
Helix 116	AM8	K	659	676	Right-handed alpha
Helix 117	AM9	K	693	698	Right-handed alpha
Helix 118	AN1	K	700	702	Right-handed 310
Helix 119	AN2	K	703	712	Right-handed alpha
Helix 120	AN3	M	15	27	Right-handed alpha
Helix 121	AN4	M	31	39	Right-handed alpha
Helix 122	AN5	M	70	92	Right-handed alpha
Helix 123	AN6	M	127	133	Right-handed alpha
Helix 124	AN7	M	136	160	Right-handed alpha
Helix 125	AN8	M	223	228	Right-handed alpha

There are 36 sheets in PDB entry 8RFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	150	151	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	254	261	anti-parallel
Strand 3	A	2	9	anti-parallel
Strand 4	A	295	302	anti-parallel
Strand 5	A	305	306	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	242	249	parallel
Strand 4	A	174	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	58	63	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	F	102	103	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	312	313	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	151	first strand
Strand 2	B	254	261	anti-parallel
Strand 3	B	2	9	anti-parallel
Strand 4	B	295	302	anti-parallel
Strand 5	B	305	306	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	242	249	parallel
Strand 4	B	174	181	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	57	60	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	140	141	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	254	261	anti-parallel
Strand 3	C	150	151	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	254	261	anti-parallel
Strand 3	C	2	9	anti-parallel
Strand 4	C	295	302	anti-parallel
Strand 5	C	305	306	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	242	249	parallel
Strand 4	C	174	181	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	58	63	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	254	261	anti-parallel
Strand 3	D	150	151	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	254	261	anti-parallel
Strand 3	D	3	9	anti-parallel
Strand 4	D	295	302	anti-parallel
Strand 5	D	305	306	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	244	249	parallel
Strand 4	D	174	179	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	58	63	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	151	first strand
Strand 2	E	254	261	anti-parallel
Strand 3	E	2	9	anti-parallel
Strand 4	E	295	302	anti-parallel
Strand 5	E	305	306	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	244	248	parallel
Strand 4	E	175	179	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	58	63	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	309	first strand
Strand 2	E	312	313	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	128	135	anti-parallel
Strand 3	F	3	10	anti-parallel
Strand 4	F	162	169	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	119	126	anti-parallel
Strand 3	F	80	86	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	64	66	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	F	213	218	anti-parallel
Strand 3	F	195	200	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	22	first strand
Strand 2	G	42	45	anti-parallel
Strand 3	G	64	66	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	29	first strand
Strand 2	G	36	37	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	84	86	anti-parallel
Strand 3	G	113	116	anti-parallel
Strand 4	G	137	141	parallel
Strand 5	G	144	148	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	181	182	first strand
Strand 2	K	281	284	parallel
Strand 3	K	154	157	parallel
Strand 4	K	322	325	parallel
Strand 5	K	476	478	parallel
Strand 6	K	125	128	parallel
Strand 7	K	503	504	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	340	342	first strand
Strand 2	K	454	457	anti-parallel
Strand 3	K	440	443	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	518	521	first strand
Strand 2	K	687	691	parallel
Strand 3	K	635	638	parallel
Strand 4	K	554	558	parallel
Strand 5	K	606	610	parallel
Strand 6	K	579	581	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	55	59	first strand
Strand 2	M	64	69	anti-parallel
Strand 3	M	2	9	anti-parallel
Strand 4	M	98	105	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	107	119	first strand
Strand 2	M	196	205	anti-parallel
Strand 3	M	169	173	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	122	123	first strand
Strand 2	M	189	194	anti-parallel
Strand 3	M	176	181	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	207	209	first strand
Strand 2	M	220	222	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RFJ