Analysis of interatomic Contacts of Structural Units in PDB entry:
8RG0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RG0 entry

There are 19 chains in PDB entry 8RG0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	ALA 2	SER 216
4	GLY 89	LEU 357
5	TYR 45	PRO 564
6	ASP 8	LEU 369
7	C -34	C -4
8	GLY 29	ASN 352
A	G 924	A 1869
H	PRO 12	LYS 82
I	GLY 10	ARG 104
M	GLN 93	ARG 132
N	LEU 19	ASN 50
O	ASP 32	GLY 233
P	GLU 25	SER 139
Q	ARG 5	ARG 100
n	LEU 11	LEU 68
u	MET 1	LYS 603
v	LEU 18	ILE 422
x	CYS 19	THR 88
y	MET 317	ASP 875

There are175 helices in PDB entry 8RG0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	3	2	17	Right-handed alpha
Helix 2	AA2	3	26	39	Right-handed alpha
Helix 3	AA3	3	43	57	Right-handed alpha
Helix 4	AA4	3	62	75	Right-handed alpha
Helix 5	AA5	3	80	88	Right-handed alpha
Helix 6	AA6	3	90	96	Right-handed alpha
Helix 7	AA7	3	96	111	Right-handed alpha
Helix 8	AA8	3	114	121	Right-handed alpha
Helix 9	AA9	3	125	131	Right-handed alpha
Helix 10	AB1	3	133	150	Right-handed alpha
Helix 11	AB2	3	154	162	Right-handed alpha
Helix 12	AB3	3	166	178	Right-handed alpha
Helix 13	AB4	3	210	216	Right-handed alpha
Helix 14	AB5	4	95	109	Right-handed alpha
Helix 15	AB6	4	110	112	Right-handed 310
Helix 16	AB7	4	149	164	Right-handed alpha
Helix 17	AB8	4	180	194	Right-handed alpha
Helix 18	AB9	4	244	258	Right-handed alpha
Helix 19	AC1	4	265	294	Right-handed alpha
Helix 20	AC2	4	301	315	Right-handed alpha
Helix 21	AC3	4	319	356	Right-handed alpha
Helix 22	AC4	5	49	77	Right-handed alpha
Helix 23	AC5	5	80	97	Right-handed alpha
Helix 24	AC6	5	97	107	Right-handed alpha
Helix 25	AC7	5	118	123	Right-handed alpha
Helix 26	AC8	5	125	144	Right-handed alpha
Helix 27	AC9	5	149	169	Right-handed alpha
Helix 28	AD1	5	179	203	Right-handed alpha
Helix 29	AD2	5	204	207	Right-handed 310
Helix 30	AD3	5	208	218	Right-handed alpha
Helix 31	AD4	5	223	239	Right-handed alpha
Helix 32	AD5	5	239	249	Right-handed alpha
Helix 33	AD6	5	252	257	Right-handed alpha
Helix 34	AD7	5	258	263	Right-handed alpha
Helix 35	AD8	5	263	285	Right-handed alpha
Helix 36	AD9	5	286	293	Right-handed alpha
Helix 37	AE1	5	303	307	Right-handed 310
Helix 38	AE2	5	308	326	Right-handed alpha
Helix 39	AE3	5	328	351	Right-handed alpha
Helix 40	AE4	5	353	378	Right-handed alpha
Helix 41	AE5	5	383	403	Right-handed alpha
Helix 42	AE6	5	405	417	Right-handed alpha
Helix 43	AE7	5	437	465	Right-handed alpha
Helix 44	AE8	5	472	479	Right-handed alpha
Helix 45	AE9	5	482	498	Right-handed alpha
Helix 46	AF1	5	539	560	Right-handed alpha
Helix 47	AF2	6	15	41	Right-handed alpha
Helix 48	AF3	6	43	54	Right-handed alpha
Helix 49	AF4	6	59	75	Right-handed alpha
Helix 50	AF5	6	80	93	Right-handed alpha
Helix 51	AF6	6	96	111	Right-handed alpha
Helix 52	AF7	6	115	130	Right-handed alpha
Helix 53	AF8	6	133	145	Right-handed alpha
Helix 54	AF9	6	155	172	Right-handed alpha
Helix 55	AG1	6	174	192	Right-handed alpha
Helix 56	AG2	6	193	199	Right-handed 310
Helix 57	AG3	6	200	213	Right-handed alpha
Helix 58	AG4	6	221	227	Right-handed alpha
Helix 59	AG5	6	237	245	Right-handed alpha
Helix 60	AG6	6	249	259	Right-handed alpha
Helix 61	AG7	6	269	288	Right-handed alpha
Helix 62	AG8	6	294	301	Right-handed alpha
Helix 63	AG9	6	304	306	Right-handed 310
Helix 64	AH1	6	307	318	Right-handed alpha
Helix 65	AH2	6	342	369	Right-handed alpha
Helix 66	AH3	8	42	55	Right-handed alpha
Helix 67	AH4	8	83	87	Right-handed 310
Helix 68	AH5	8	92	107	Right-handed alpha
Helix 69	AH6	8	130	144	Right-handed alpha
Helix 70	AH7	8	170	178	Right-handed alpha
Helix 71	AH8	8	211	225	Right-handed alpha
Helix 72	AH9	8	228	237	Right-handed alpha
Helix 73	AI1	8	247	287	Right-handed alpha
Helix 74	AI2	8	294	304	Right-handed alpha
Helix 75	AI3	8	308	350	Right-handed alpha
Helix 76	AI4	H	13	18	Right-handed alpha
Helix 77	AI5	I	29	42	Right-handed alpha
Helix 78	AI6	I	46	57	Right-handed alpha
Helix 79	AI7	I	62	68	Right-handed alpha
Helix 80	AI8	I	70	78	Right-handed alpha
Helix 81	AI9	I	85	104	Right-handed alpha
Helix 82	AJ1	M	99	106	Right-handed alpha
Helix 83	AJ2	N	31	36	Right-handed alpha
Helix 84	AJ3	O	71	76	Right-handed alpha
Helix 85	AJ4	O	106	114	Right-handed alpha
Helix 86	AJ5	O	157	175	Right-handed alpha
Helix 87	AJ6	O	180	189	Right-handed alpha
Helix 88	AJ7	O	191	201	Right-handed alpha
Helix 89	AJ8	O	224	232	Right-handed alpha
Helix 90	AJ9	P	66	69	Right-handed 310
Helix 91	AK1	P	70	79	Right-handed alpha
Helix 92	AK2	P	110	122	Right-handed alpha
Helix 93	AK3	Q	46	48	Right-handed 310
Helix 94	AK4	Q	49	55	Right-handed alpha
Helix 95	AK5	Q	74	81	Right-handed alpha
Helix 96	AK6	Q	89	93	Right-handed 310
Helix 97	AK7	u	7	22	Right-handed alpha
Helix 98	AK8	u	23	37	Right-handed alpha
Helix 99	AK9	u	46	61	Right-handed alpha
Helix 100	AL1	u	63	78	Right-handed alpha
Helix 101	AL2	u	82	116	Right-handed alpha
Helix 102	AL3	u	123	133	Right-handed alpha
Helix 103	AL4	u	136	164	Right-handed alpha
Helix 104	AL5	u	170	188	Right-handed alpha
Helix 105	AL6	u	190	212	Right-handed alpha
Helix 106	AL7	u	222	243	Right-handed alpha
Helix 107	AL8	u	246	261	Right-handed alpha
Helix 108	AL9	u	271	286	Right-handed alpha
Helix 109	AM1	u	288	307	Right-handed alpha
Helix 110	AM2	u	311	329	Right-handed alpha
Helix 111	AM3	u	346	359	Right-handed alpha
Helix 112	AM4	u	368	376	Right-handed alpha
Helix 113	AM5	u	378	382	Right-handed 310
Helix 114	AM6	u	384	389	Right-handed alpha
Helix 115	AM7	u	389	396	Right-handed alpha
Helix 116	AM8	u	399	416	Right-handed alpha
Helix 117	AM9	u	421	426	Right-handed alpha
Helix 118	AN1	u	427	447	Right-handed alpha
Helix 119	AN2	u	451	459	Right-handed alpha
Helix 120	AN3	u	463	478	Right-handed alpha
Helix 121	AN4	u	486	489	Right-handed 310
Helix 122	AN5	u	516	536	Right-handed alpha
Helix 123	AN6	u	539	561	Right-handed alpha
Helix 124	AN7	u	565	569	Right-handed 310
Helix 125	AN8	u	582	603	Right-handed alpha
Helix 126	AN9	v	21	28	Right-handed 310
Helix 127	AO1	v	36	41	Right-handed alpha
Helix 128	AO2	v	48	55	Right-handed alpha
Helix 129	AO3	v	61	71	Right-handed alpha
Helix 130	AO4	v	76	87	Right-handed alpha
Helix 131	AO5	v	91	112	Right-handed alpha
Helix 132	AO6	v	112	117	Right-handed alpha
Helix 133	AO7	v	128	143	Right-handed alpha
Helix 134	AO8	v	145	158	Right-handed alpha
Helix 135	AO9	v	164	180	Right-handed alpha
Helix 136	AP1	v	181	199	Right-handed alpha
Helix 137	AP2	v	203	217	Right-handed alpha
Helix 138	AP3	v	224	234	Right-handed alpha
Helix 139	AP4	v	238	247	Right-handed alpha
Helix 140	AP5	v	253	263	Right-handed alpha
Helix 141	AP6	v	270	282	Right-handed alpha
Helix 142	AP7	v	291	302	Right-handed alpha
Helix 143	AP8	v	305	320	Right-handed alpha
Helix 144	AP9	v	329	348	Right-handed alpha
Helix 145	AQ1	v	353	358	Right-handed alpha
Helix 146	AQ2	v	363	377	Right-handed alpha
Helix 147	AQ3	v	402	421	Right-handed alpha
Helix 148	AQ4	y	328	340	Right-handed alpha
Helix 149	AQ5	y	346	364	Right-handed alpha
Helix 150	AQ6	y	367	384	Right-handed alpha
Helix 151	AQ7	y	394	415	Right-handed alpha
Helix 152	AQ8	y	443	462	Right-handed alpha
Helix 153	AQ9	y	466	474	Right-handed alpha
Helix 154	AR1	y	475	493	Right-handed alpha
Helix 155	AR2	y	495	513	Right-handed alpha
Helix 156	AR3	y	515	520	Right-handed alpha
Helix 157	AR4	y	543	558	Right-handed alpha
Helix 158	AR5	y	561	579	Right-handed alpha
Helix 159	AR6	y	581	593	Right-handed alpha
Helix 160	AR7	y	594	601	Right-handed 310
Helix 161	AR8	y	602	623	Right-handed alpha
Helix 162	AR9	y	626	639	Right-handed alpha
Helix 163	AS1	y	660	667	Right-handed alpha
Helix 164	AS2	y	672	676	Right-handed 310
Helix 165	AS3	y	678	701	Right-handed alpha
Helix 166	AS4	y	702	704	Right-handed 310
Helix 167	AS5	y	711	724	Right-handed alpha
Helix 168	AS6	y	732	746	Right-handed alpha
Helix 169	AS7	y	749	757	Right-handed alpha
Helix 170	AS8	y	758	765	Right-handed alpha
Helix 171	AS9	y	766	769	Right-handed 310
Helix 172	AT1	y	771	795	Right-handed alpha
Helix 173	AT2	y	804	812	Right-handed alpha
Helix 174	AT3	y	814	827	Right-handed alpha
Helix 175	AT4	y	856	875	Right-handed alpha

There are 22 sheets in PDB entry 8RG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	91	94	first strand
Strand 2	4	236	239	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	128	135	first strand
Strand 2	4	118	125	anti-parallel
Strand 3	4	168	174	anti-parallel
Strand 4	4	199	202	parallel
Strand 5	4	213	216	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	469	471	first strand
Strand 2	5	527	531	anti-parallel
Strand 3	5	520	524	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	499	501	first strand
Strand 2	5	512	514	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	292	293	first strand
Strand 2	6	331	335	anti-parallel
Strand 3	6	322	325	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	80	82	first strand
Strand 2	8	65	68	anti-parallel
Strand 3	8	119	122	anti-parallel
Strand 4	8	150	152	parallel
Strand 5	8	164	166	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	168	169	first strand
Strand 2	8	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	32	36	anti-parallel
Strand 3	H	78	81	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	64	65	first strand
Strand 2	H	72	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	96	98	first strand
Strand 2	M	117	119	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	34	first strand
Strand 2	O	96	105	parallel
Strand 3	O	82	88	anti-parallel
Strand 4	O	67	70	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	34	first strand
Strand 2	O	96	105	parallel
Strand 3	O	208	219	anti-parallel
Strand 4	O	134	142	anti-parallel
Strand 5	O	120	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	29	31	first strand
Strand 2	P	44	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	34	35	first strand
Strand 2	P	40	41	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	92	93	first strand
Strand 2	P	125	126	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	130	131	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	20	22	first strand
Strand 2	Q	29	31	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	36	43	first strand
Strand 2	Q	66	73	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	39	47	first strand
Strand 2	n	27	34	anti-parallel
Strand 3	n	12	21	anti-parallel
Strand 4	n	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	482	485	first strand
Strand 2	u	490	493	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	351	352	first strand
Strand 2	v	390	393	anti-parallel
Strand 3	v	382	383	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	801	803	first strand
Strand 2	y	840	842	anti-parallel
Strand 3	y	833	835	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RG0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RG0