Analysis of interatomic Contacts of Structural Units in PDB entry:
8RG3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RG3 entry

There are 6 chains in PDB entry 8RG3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 37	ARG 392
B	SER 38	ARG 392
C	GLU 37	ARG 392
D	GLU 37	ARG 392
E	SER 38	ARG 392
F	GLU 37	ARG 392

There are 84 helices in PDB entry 8RG3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	73	Right-handed alpha
Helix 2	AA2	A	83	88	Right-handed alpha
Helix 3	AA3	A	89	105	Right-handed alpha
Helix 4	AA4	A	123	130	Right-handed alpha
Helix 5	AA5	A	131	136	Right-handed 310
Helix 6	AA6	A	158	174	Right-handed alpha
Helix 7	AA7	A	185	191	Right-handed alpha
Helix 8	AA8	A	193	199	Right-handed alpha
Helix 9	AA9	A	199	222	Right-handed alpha
Helix 10	AB1	A	258	262	Right-handed 310
Helix 11	AB2	A	263	280	Right-handed alpha
Helix 12	AB3	A	296	302	Right-handed alpha
Helix 13	AB4	A	303	315	Right-handed alpha
Helix 14	AB5	A	315	326	Right-handed alpha
Helix 15	AB6	A	348	352	Right-handed 310
Helix 16	AB7	B	62	71	Right-handed alpha
Helix 17	AB8	B	83	88	Right-handed alpha
Helix 18	AB9	B	89	105	Right-handed alpha
Helix 19	AC1	B	124	130	Right-handed alpha
Helix 20	AC2	B	158	174	Right-handed alpha
Helix 21	AC3	B	185	191	Right-handed alpha
Helix 22	AC4	B	192	222	Right-handed alpha
Helix 23	AC5	B	263	280	Right-handed alpha
Helix 24	AC6	B	296	302	Right-handed alpha
Helix 25	AC7	B	303	315	Right-handed alpha
Helix 26	AC8	B	315	326	Right-handed alpha
Helix 27	AC9	B	348	352	Right-handed 310
Helix 28	AD1	C	62	73	Right-handed alpha
Helix 29	AD2	C	83	88	Right-handed alpha
Helix 30	AD3	C	89	105	Right-handed alpha
Helix 31	AD4	C	124	130	Right-handed alpha
Helix 32	AD5	C	158	174	Right-handed alpha
Helix 33	AD6	C	185	191	Right-handed alpha
Helix 34	AD7	C	193	199	Right-handed alpha
Helix 35	AD8	C	199	222	Right-handed alpha
Helix 36	AD9	C	258	262	Right-handed 310
Helix 37	AE1	C	263	280	Right-handed alpha
Helix 38	AE2	C	296	301	Right-handed alpha
Helix 39	AE3	C	303	314	Right-handed alpha
Helix 40	AE4	C	315	326	Right-handed alpha
Helix 41	AE5	C	348	352	Right-handed 310
Helix 42	AE6	D	62	73	Right-handed alpha
Helix 43	AE7	D	83	88	Right-handed alpha
Helix 44	AE8	D	89	105	Right-handed alpha
Helix 45	AE9	D	123	130	Right-handed alpha
Helix 46	AF1	D	131	136	Right-handed 310
Helix 47	AF2	D	148	150	Right-handed 310
Helix 48	AF3	D	158	174	Right-handed alpha
Helix 49	AF4	D	185	191	Right-handed alpha
Helix 50	AF5	D	193	199	Right-handed alpha
Helix 51	AF6	D	199	222	Right-handed alpha
Helix 52	AF7	D	258	262	Right-handed 310
Helix 53	AF8	D	263	280	Right-handed alpha
Helix 54	AF9	D	293	300	Right-handed alpha
Helix 55	AG1	D	303	315	Right-handed alpha
Helix 56	AG2	D	315	326	Right-handed alpha
Helix 57	AG3	D	348	352	Right-handed 310
Helix 58	AG4	E	62	73	Right-handed alpha
Helix 59	AG5	E	83	88	Right-handed alpha
Helix 60	AG6	E	89	105	Right-handed alpha
Helix 61	AG7	E	124	130	Right-handed alpha
Helix 62	AG8	E	148	150	Right-handed 310
Helix 63	AG9	E	158	174	Right-handed alpha
Helix 64	AH1	E	185	190	Right-handed alpha
Helix 65	AH2	E	192	199	Right-handed alpha
Helix 66	AH3	E	199	222	Right-handed alpha
Helix 67	AH4	E	258	262	Right-handed 310
Helix 68	AH5	E	263	280	Right-handed alpha
Helix 69	AH6	E	298	302	Right-handed 310
Helix 70	AH7	E	303	314	Right-handed alpha
Helix 71	AH8	E	315	326	Right-handed alpha
Helix 72	AH9	E	348	352	Right-handed 310
Helix 73	AI1	F	62	71	Right-handed alpha
Helix 74	AI2	F	83	88	Right-handed alpha
Helix 75	AI3	F	89	105	Right-handed alpha
Helix 76	AI4	F	124	130	Right-handed alpha
Helix 77	AI5	F	158	174	Right-handed alpha
Helix 78	AI6	F	185	191	Right-handed alpha
Helix 79	AI7	F	193	222	Right-handed alpha
Helix 80	AI8	F	263	280	Right-handed alpha
Helix 81	AI9	F	296	301	Right-handed alpha
Helix 82	AJ1	F	303	314	Right-handed alpha
Helix 83	AJ2	F	315	326	Right-handed alpha
Helix 84	AJ3	F	348	352	Right-handed 310

There are 21 sheets in PDB entry 8RG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	75	78	parallel
Strand 3	A	109	113	parallel
Strand 4	A	180	183	parallel
Strand 5	A	226	232	parallel
Strand 6	A	250	253	parallel
Strand 7	A	283	289	parallel
Strand 8	A	330	335	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	151	152	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	368	373	anti-parallel
Strand 3	A	376	381	anti-parallel
Strand 4	A	387	391	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	75	78	parallel
Strand 3	B	109	115	parallel
Strand 4	B	180	184	parallel
Strand 5	B	226	234	parallel
Strand 6	B	239	240	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	75	78	parallel
Strand 3	B	109	115	parallel
Strand 4	B	180	184	parallel
Strand 5	B	226	234	parallel
Strand 6	B	250	253	parallel
Strand 7	B	283	289	parallel
Strand 8	B	330	335	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	368	373	anti-parallel
Strand 3	B	376	381	anti-parallel
Strand 4	B	387	391	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	75	78	parallel
Strand 3	C	109	113	parallel
Strand 4	C	180	183	parallel
Strand 5	C	226	234	parallel
Strand 6	C	239	240	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	75	78	parallel
Strand 3	C	109	113	parallel
Strand 4	C	180	183	parallel
Strand 5	C	226	234	parallel
Strand 6	C	250	253	parallel
Strand 7	C	283	289	parallel
Strand 8	C	330	335	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	151	152	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	365	first strand
Strand 2	C	368	373	anti-parallel
Strand 3	C	376	381	anti-parallel
Strand 4	C	386	391	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	75	78	parallel
Strand 3	D	109	115	parallel
Strand 4	D	180	184	parallel
Strand 5	D	226	229	parallel
Strand 6	D	250	253	parallel
Strand 7	D	283	288	parallel
Strand 8	D	330	334	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	151	152	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	234	first strand
Strand 2	D	239	240	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	365	first strand
Strand 2	D	368	373	anti-parallel
Strand 3	D	376	381	anti-parallel
Strand 4	D	386	391	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	75	78	parallel
Strand 3	E	109	113	parallel
Strand 4	E	180	184	parallel
Strand 5	E	226	234	parallel
Strand 6	E	239	240	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	54	first strand
Strand 2	E	75	78	parallel
Strand 3	E	109	113	parallel
Strand 4	E	180	184	parallel
Strand 5	E	226	234	parallel
Strand 6	E	250	253	parallel
Strand 7	E	283	289	parallel
Strand 8	E	330	335	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	151	152	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	365	first strand
Strand 2	E	368	373	anti-parallel
Strand 3	E	376	381	anti-parallel
Strand 4	E	386	391	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	75	78	parallel
Strand 3	F	109	115	parallel
Strand 4	F	180	184	parallel
Strand 5	F	226	229	parallel
Strand 6	F	250	253	parallel
Strand 7	F	283	289	parallel
Strand 8	F	330	335	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	233	234	first strand
Strand 2	F	239	240	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	365	first strand
Strand 2	F	368	373	anti-parallel
Strand 3	F	376	381	anti-parallel
Strand 4	F	386	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RG3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RG3