Analysis of interatomic Contacts of Structural Units in PDB entry:
8RG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RG5 entry

There are 2 chains in PDB entry 8RG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 39ARG 392
B
 HIS 39CYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8RG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 71Right-handed alpha
Helix 2
AA2
A
83 88Right-handed alpha
Helix 3
AA3
A
89 105Right-handed alpha
Helix 4
AA4
A
123 130Right-handed alpha
Helix 5
AA5
A
131 136Right-handed 310
Helix 6
AA6
A
148 150Right-handed 310
Helix 7
AA7
A
158 174Right-handed alpha
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
193 199Right-handed alpha
Helix 10
AB1
A
199 222Right-handed alpha
Helix 11
AB2
A
263 280Right-handed alpha
Helix 12
AB3
A
296 302Right-handed alpha
Helix 13
AB4
A
303 314Right-handed alpha
Helix 14
AB5
A
315 326Right-handed alpha
Helix 15
AB6
A
348 352Right-handed 310
Helix 16
AB7
B
62 73Right-handed alpha
Helix 17
AB8
B
83 88Right-handed alpha
Helix 18
AB9
B
89 105Right-handed alpha
Helix 19
AC1
B
124 131Right-handed alpha
Helix 20
AC2
B
148 150Right-handed 310
Helix 21
AC3
B
158 174Right-handed alpha
Helix 22
AC4
B
185 191Right-handed alpha
Helix 23
AC5
B
193 222Right-handed alpha
Helix 24
AC6
B
263 280Right-handed alpha
Helix 25
AC7
B
296 301Right-handed alpha
Helix 26
AC8
B
303 314Right-handed alpha
Helix 27
AC9
B
315 326Right-handed alpha
Helix 28
AD1
B
348 352Right-handed 310
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There are 8 sheets in PDB entry 8RG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
75 78parallel
Strand 3
A
109 115parallel
Strand 4
A
180 184parallel
Strand 5
A
226 234parallel
Strand 6
A
239 240anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
75 78parallel
Strand 3
A
109 115parallel
Strand 4
A
180 184parallel
Strand 5
A
226 234parallel
Strand 6
A
250 253parallel
Strand 7
A
283 289parallel
Strand 8
A
330 335parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
151 152anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
376 381anti-parallel
Strand 4
A
387 391anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
75 78parallel
Strand 3
B
109 115parallel
Strand 4
B
180 184parallel
Strand 5
B
226 234parallel
Strand 6
B
239 240anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
75 78parallel
Strand 3
B
109 115parallel
Strand 4
B
180 184parallel
Strand 5
B
226 234parallel
Strand 6
B
250 253parallel
Strand 7
B
283 289parallel
Strand 8
B
330 335parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 147first strand
Strand 2
B
151 152anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
368 372anti-parallel
Strand 3
B
376 381anti-parallel
Strand 4
B
387 391anti-parallel
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