Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RGH entry

There are 6 chains in PDB entry 8RGH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 170	ASN 771
C	THR 574	ALA 1057
D	ASP 104	ASP 133
E	ARG 313	SER 339
G	GLU 3	THR 95
H	GLU 3	THR 95

There are 36 helices in PDB entry 8RGH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	186	Right-handed alpha
Helix 2	AA2	A	188	211	Right-handed alpha
Helix 3	AA3	A	212	215	Right-handed 310
Helix 4	AA4	A	216	237	Right-handed alpha
Helix 5	AA5	A	244	269	Right-handed alpha
Helix 6	AA6	A	276	304	Right-handed alpha
Helix 7	AA7	A	304	309	Right-handed alpha
Helix 8	AA8	A	322	348	Right-handed alpha
Helix 9	AA9	A	351	366	Right-handed alpha
Helix 10	AB1	A	377	410	Right-handed alpha
Helix 11	AB2	A	413	424	Right-handed alpha
Helix 12	AB3	A	424	429	Right-handed alpha
Helix 13	AB4	A	430	437	Right-handed alpha
Helix 14	AB5	A	437	465	Right-handed alpha
Helix 15	AB6	A	481	507	Right-handed alpha
Helix 16	AB7	A	512	546	Right-handed alpha
Helix 17	AB8	A	576	593	Right-handed alpha
Helix 18	AB9	A	597	630	Right-handed alpha
Helix 19	AC1	A	635	654	Right-handed alpha
Helix 20	AC2	A	667	708	Right-handed alpha
Helix 21	AC3	A	711	713	Right-handed 310
Helix 22	AC4	A	714	735	Right-handed alpha
Helix 23	AC5	A	738	770	Right-handed alpha
Helix 24	AC6	C	578	585	Right-handed alpha
Helix 25	AC7	C	585	611	Right-handed alpha
Helix 26	AC8	C	669	674	Right-handed alpha
Helix 27	AC9	C	753	755	Right-handed 310
Helix 28	AD1	C	845	850	Right-handed alpha
Helix 29	AD2	C	1036	1041	Right-handed alpha
Helix 30	AD3	C	1045	1057	Right-handed alpha
Helix 31	AD4	D	105	129	Right-handed alpha
Helix 32	AD5	E	319	339	Right-handed alpha
Helix 33	AD6	G	4	13	Right-handed alpha
Helix 34	AD7	G	35	61	Right-handed alpha
Helix 35	AD8	H	4	13	Right-handed alpha
Helix 36	AD9	H	35	61	Right-handed alpha

There are 10 sheets in PDB entry 8RGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	564	first strand
Strand 2	A	571	573	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	632	first strand
Strand 2	C	1030	1034	anti-parallel
Strand 3	C	1020	1025	anti-parallel
Strand 4	C	1002	1007	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	644	649	first strand
Strand 2	C	656	661	anti-parallel
Strand 3	C	676	682	anti-parallel
Strand 4	C	691	695	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	704	first strand
Strand 2	C	711	716	anti-parallel
Strand 3	C	721	725	anti-parallel
Strand 4	C	750	751	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	738	first strand
Strand 2	C	741	744	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	771	first strand
Strand 2	C	798	803	anti-parallel
Strand 3	C	808	815	anti-parallel
Strand 4	C	836	840	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	863	868	first strand
Strand 2	C	875	880	anti-parallel
Strand 3	C	885	889	anti-parallel
Strand 4	C	899	900	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	912	917	first strand
Strand 2	C	924	929	anti-parallel
Strand 3	C	934	938	anti-parallel
Strand 4	C	946	948	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	957	962	first strand
Strand 2	C	969	974	anti-parallel
Strand 3	C	978	983	anti-parallel
Strand 4	C	993	996	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	17	24	anti-parallel
Strand 3	G	86	92	anti-parallel
Strand 4	G	77	82	anti-parallel
Strand 5	G	66	73	anti-parallel
Strand 6	H	66	73	anti-parallel
Strand 7	H	77	82	anti-parallel
Strand 8	H	86	92	anti-parallel
Strand 9	H	21	24	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RGH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGH