Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RGN entry

There are 2 chains in PDB entry 8RGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ASN 586
B
 LYS 9ASN 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8RGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
27 57Right-handed alpha
Helix 4
AA4
A
61 66Right-handed alpha
Helix 5
AA5
A
67 107Right-handed alpha
Helix 6
AA6
A
111 118Right-handed alpha
Helix 7
AA7
A
119 129Right-handed alpha
Helix 8
AA8
A
130 140Right-handed alpha
Helix 9
AA9
A
140 163Right-handed alpha
Helix 10
AB1
A
165 210Right-handed alpha
Helix 11
AB2
A
212 220Right-handed alpha
Helix 12
AB3
A
221 248Right-handed alpha
Helix 13
AB4
A
250 273Right-handed alpha
Helix 14
AB5
A
279 315Right-handed alpha
Helix 15
AB6
A
380 388Right-handed alpha
Helix 16
AB7
A
406 409Right-handed 310
Helix 17
AB8
A
410 415Right-handed alpha
Helix 18
AB9
A
444 453Right-handed alpha
Helix 19
AC1
A
459 464Right-handed alpha
Helix 20
AC2
A
473 477Right-handed 310
Helix 21
AC3
A
482 495Right-handed alpha
Helix 22
AC4
A
510 525Right-handed alpha
Helix 23
AC5
A
536 540Right-handed 310
Helix 24
AC6
A
559 567Right-handed alpha
Helix 25
AC7
A
567 585Right-handed alpha
Helix 26
AC8
B
11 21Right-handed alpha
Helix 27
AC9
B
22 26Right-handed 310
Helix 28
AD1
B
27 57Right-handed alpha
Helix 29
AD2
B
59 66Right-handed alpha
Helix 30
AD3
B
67 107Right-handed alpha
Helix 31
AD4
B
111 118Right-handed alpha
Helix 32
AD5
B
119 129Right-handed alpha
Helix 33
AD6
B
130 140Right-handed alpha
Helix 34
AD7
B
140 163Right-handed alpha
Helix 35
AD8
B
165 210Right-handed alpha
Helix 36
AD9
B
212 220Right-handed alpha
Helix 37
AE1
B
221 248Right-handed alpha
Helix 38
AE2
B
250 273Right-handed alpha
Helix 39
AE3
B
279 315Right-handed alpha
Helix 40
AE4
B
380 388Right-handed alpha
Helix 41
AE5
B
406 409Right-handed 310
Helix 42
AE6
B
410 415Right-handed alpha
Helix 43
AE7
B
446 455Right-handed alpha
Helix 44
AE8
B
473 477Right-handed 310
Helix 45
AE9
B
482 495Right-handed alpha
Helix 46
AF1
B
510 525Right-handed alpha
Helix 47
AF2
B
536 540Right-handed 310
Helix 48
AF3
B
559 567Right-handed alpha
Helix 49
AF4
B
567 585Right-handed alpha
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There are 6 sheets in PDB entry 8RGN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
341 343anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
403 404anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
357 360anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
499 502parallel
Strand 3
A
529 533parallel
Strand 4
A
369 373parallel
Strand 5
A
545 550parallel
Strand 6
A
553 558anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
341 343anti-parallel
Strand 3
B
398 400anti-parallel
Strand 4
B
403 404anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
357 360anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
499 502parallel
Strand 3
B
529 533parallel
Strand 4
B
369 373parallel
Strand 5
B
545 550parallel
Strand 6
B
553 558anti-parallel
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