Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RGU entry

There are 3 chains in PDB entry 8RGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 17PRO 340
B
 VAL 23SER 341
C
 PHE 20HIS 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 51 helices in PDB entry 8RGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 43Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
88 109Right-handed alpha
Helix 5
AA5
A
119 121Right-handed 310
Helix 6
AA6
A
122 134Right-handed alpha
Helix 7
AA7
A
158 161Right-handed 310
Helix 8
AA8
A
162 168Right-handed alpha
Helix 9
AA9
A
169 175Right-handed 310
Helix 10
AB1
A
189 191Right-handed 310
Helix 11
AB2
A
202 212Right-handed alpha
Helix 12
AB3
A
219 226Right-handed alpha
Helix 13
AB4
A
226 240Right-handed alpha
Helix 14
AB5
A
253 255Right-handed 310
Helix 15
AB6
A
272 286Right-handed alpha
Helix 16
AB7
A
298 302Right-handed 310
Helix 17
AB8
A
304 323Right-handed alpha
Helix 18
AB9
B
41 43Right-handed 310
Helix 19
AC1
B
44 52Right-handed alpha
Helix 20
AC2
B
53 61Right-handed alpha
Helix 21
AC3
B
88 109Right-handed alpha
Helix 22
AC4
B
119 121Right-handed 310
Helix 23
AC5
B
122 134Right-handed alpha
Helix 24
AC6
B
158 161Right-handed 310
Helix 25
AC7
B
162 168Right-handed alpha
Helix 26
AC8
B
169 175Right-handed 310
Helix 27
AC9
B
189 191Right-handed 310
Helix 28
AD1
B
202 212Right-handed alpha
Helix 29
AD2
B
219 226Right-handed alpha
Helix 30
AD3
B
226 240Right-handed alpha
Helix 31
AD4
B
253 255Right-handed 310
Helix 32
AD5
B
272 286Right-handed alpha
Helix 33
AD6
B
298 302Right-handed 310
Helix 34
AD7
B
304 323Right-handed alpha
Helix 35
AD8
C
41 43Right-handed 310
Helix 36
AD9
C
44 52Right-handed alpha
Helix 37
AE1
C
53 61Right-handed alpha
Helix 38
AE2
C
88 109Right-handed alpha
Helix 39
AE3
C
119 121Right-handed 310
Helix 40
AE4
C
122 132Right-handed alpha
Helix 41
AE5
C
158 161Right-handed 310
Helix 42
AE6
C
162 168Right-handed alpha
Helix 43
AE7
C
169 175Right-handed 310
Helix 44
AE8
C
189 191Right-handed 310
Helix 45
AE9
C
202 212Right-handed alpha
Helix 46
AF1
C
218 226Right-handed alpha
Helix 47
AF2
C
226 240Right-handed alpha
Helix 48
AF3
C
253 255Right-handed 310
Helix 49
AF4
C
272 286Right-handed alpha
Helix 50
AF5
C
298 302Right-handed 310
Helix 51
AF6
C
304 323Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8RGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 70first strand
Strand 2
A
25 31parallel
Strand 3
A
112 117parallel
Strand 4
A
289 295parallel
Strand 5
A
246 251parallel
Strand 6
A
138 142parallel
Strand 7
A
193 198parallel
Strand 8
A
215 218parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 70first strand
Strand 2
B
25 31parallel
Strand 3
B
112 117parallel
Strand 4
B
289 295parallel
Strand 5
B
246 251parallel
Strand 6
B
138 142parallel
Strand 7
B
193 198parallel
Strand 8
B
215 218parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 70first strand
Strand 2
C
25 30parallel
Strand 3
C
112 116parallel
Strand 4
C
289 295parallel
Strand 5
C
246 251parallel
Strand 6
C
138 142parallel
Strand 7
C
193 196parallel
Strand 8
C
215 217parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il