Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RGZ entry

There are 9 chains in PDB entry 8RGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 111	ALA 725
D	THR 22	SER 141
E	ILE 21	LYS 131
B	ALA 111	ALA 725
C	ALA 111	ALA 725
H	THR 22	SER 141
F	THR 22	SER 141
L	ILE 21	LYS 131
G	ILE 21	LYS 131

There are 43 helices in PDB entry 8RGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	198	Right-handed alpha
Helix 2	AA2	A	225	227	Right-handed 310
Helix 3	AA3	A	315	317	Right-handed 310
Helix 4	AA4	A	403	407	Right-handed 310
Helix 5	AA5	A	410	429	Right-handed alpha
Helix 6	AA6	A	501	546	Right-handed alpha
Helix 7	AA7	A	546	556	Right-handed alpha
Helix 8	AA8	A	577	579	Right-handed 310
Helix 9	AA9	A	660	664	Right-handed 310
Helix 10	AB1	A	690	698	Right-handed alpha
Helix 11	AB2	A	701	710	Right-handed alpha
Helix 12	AB3	A	711	717	Right-handed alpha
Helix 13	AB4	D	107	111	Right-handed 310
Helix 14	AB5	E	103	107	Right-handed 310
Helix 15	AB6	B	193	199	Right-handed alpha
Helix 16	AB7	B	225	227	Right-handed 310
Helix 17	AB8	B	315	317	Right-handed 310
Helix 18	AB9	B	403	407	Right-handed 310
Helix 19	AC1	B	410	429	Right-handed alpha
Helix 20	AC2	B	501	546	Right-handed alpha
Helix 21	AC3	B	546	556	Right-handed alpha
Helix 22	AC4	B	577	579	Right-handed 310
Helix 23	AC5	B	660	664	Right-handed 310
Helix 24	AC6	B	690	698	Right-handed alpha
Helix 25	AC7	B	701	711	Right-handed alpha
Helix 26	AC8	B	711	717	Right-handed alpha
Helix 27	AC9	C	193	200	Right-handed alpha
Helix 28	AD1	C	225	227	Right-handed 310
Helix 29	AD2	C	315	317	Right-handed 310
Helix 30	AD3	C	358	363	Right-handed alpha
Helix 31	AD4	C	403	407	Right-handed 310
Helix 32	AD5	C	410	429	Right-handed alpha
Helix 33	AD6	C	501	546	Right-handed alpha
Helix 34	AD7	C	546	556	Right-handed alpha
Helix 35	AD8	C	577	579	Right-handed 310
Helix 36	AD9	C	660	664	Right-handed 310
Helix 37	AE1	C	690	698	Right-handed alpha
Helix 38	AE2	C	701	711	Right-handed alpha
Helix 39	AE3	C	711	717	Right-handed alpha
Helix 40	AE4	H	107	111	Right-handed 310
Helix 41	AE5	F	107	111	Right-handed 310
Helix 42	AE6	L	103	107	Right-handed 310
Helix 43	AE7	G	103	107	Right-handed 310

There are 52 sheets in PDB entry 8RGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	113	115	anti-parallel
Strand 3	A	622	624	parallel
Strand 4	A	613	617	anti-parallel
Strand 5	A	601	604	anti-parallel
Strand 6	A	581	583	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	563	first strand
Strand 2	A	568	572	anti-parallel
Strand 3	A	124	127	anti-parallel
Strand 4	C	665	667	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	372	first strand
Strand 2	A	145	152	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	433	435	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	372	first strand
Strand 2	A	145	152	anti-parallel
Strand 3	A	448	457	anti-parallel
Strand 4	A	440	444	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	191	first strand
Strand 2	A	157	175	anti-parallel
Strand 3	A	263	280	anti-parallel
Strand 4	A	287	289	anti-parallel
Strand 5	A	294	295	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	246	248	anti-parallel
Strand 3	A	263	280	anti-parallel
Strand 4	A	157	175	anti-parallel
Strand 5	A	351	355	anti-parallel
Strand 6	A	340	346	anti-parallel
Strand 7	A	319	325	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	219	223	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	383	388	anti-parallel
Strand 3	A	393	398	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	630	632	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	643	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	659	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	667	first strand
Strand 2	B	124	127	parallel
Strand 3	B	568	572	anti-parallel
Strand 4	B	559	563	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	98	103	anti-parallel
Strand 4	D	37	38	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	40	42	anti-parallel
Strand 3	D	98	103	anti-parallel
Strand 4	D	88	93	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	135	139	parallel
Strand 3	D	112	119	anti-parallel
Strand 4	D	54	60	anti-parallel
Strand 5	D	67	73	anti-parallel
Strand 6	D	78	80	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	26	first strand
Strand 2	E	38	44	anti-parallel
Strand 3	E	94	99	anti-parallel
Strand 4	E	86	91	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	126	130	parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	57	62	anti-parallel
Strand 5	E	69	73	anti-parallel
Strand 6	E	77	78	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	126	130	parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	121	122	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	113	115	anti-parallel
Strand 3	B	622	624	parallel
Strand 4	B	613	617	anti-parallel
Strand 5	B	601	604	anti-parallel
Strand 6	B	581	583	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	372	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	448	457	anti-parallel
Strand 4	B	433	435	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	372	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	448	457	anti-parallel
Strand 4	B	440	444	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	191	first strand
Strand 2	B	157	175	anti-parallel
Strand 3	B	263	280	anti-parallel
Strand 4	B	287	289	anti-parallel
Strand 5	B	294	295	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	246	248	anti-parallel
Strand 3	B	263	280	anti-parallel
Strand 4	B	157	175	anti-parallel
Strand 5	B	351	355	anti-parallel
Strand 6	B	340	346	anti-parallel
Strand 7	B	319	325	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	219	223	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	383	388	anti-parallel
Strand 3	B	393	398	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	597	first strand
Strand 2	B	630	632	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	643	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	654	659	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	667	first strand
Strand 2	C	124	127	parallel
Strand 3	C	568	572	anti-parallel
Strand 4	C	559	563	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	576	first strand
Strand 2	C	113	115	anti-parallel
Strand 3	C	622	624	parallel
Strand 4	C	613	617	anti-parallel
Strand 5	C	601	604	anti-parallel
Strand 6	C	581	584	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	372	first strand
Strand 2	C	145	152	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	433	435	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	372	first strand
Strand 2	C	145	152	anti-parallel
Strand 3	C	448	457	anti-parallel
Strand 4	C	440	444	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	191	first strand
Strand 2	C	157	175	anti-parallel
Strand 3	C	263	280	anti-parallel
Strand 4	C	287	289	anti-parallel
Strand 5	C	294	295	anti-parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	246	248	anti-parallel
Strand 3	C	263	280	anti-parallel
Strand 4	C	157	175	anti-parallel
Strand 5	C	351	355	anti-parallel
Strand 6	C	340	346	anti-parallel
Strand 7	C	319	325	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	231	233	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	214	first strand
Strand 2	C	219	223	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	383	388	anti-parallel
Strand 3	C	393	398	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	597	first strand
Strand 2	C	630	632	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	643	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	654	659	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	26	first strand
Strand 2	H	40	43	anti-parallel
Strand 3	H	98	103	anti-parallel
Strand 4	H	37	38	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	26	first strand
Strand 2	H	40	43	anti-parallel
Strand 3	H	98	103	anti-parallel
Strand 4	H	88	93	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	135	139	parallel
Strand 3	H	112	119	anti-parallel
Strand 4	H	54	60	anti-parallel
Strand 5	H	67	73	anti-parallel
Strand 6	H	78	80	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	40	43	anti-parallel
Strand 3	F	98	103	anti-parallel
Strand 4	F	37	38	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	26	first strand
Strand 2	F	40	43	anti-parallel
Strand 3	F	98	103	anti-parallel
Strand 4	F	88	93	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	135	139	parallel
Strand 3	F	112	119	anti-parallel
Strand 4	F	54	60	anti-parallel
Strand 5	F	67	73	anti-parallel
Strand 6	F	78	80	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	135	139	parallel
Strand 3	F	112	119	anti-parallel
Strand 4	F	130	131	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	23	26	first strand
Strand 2	L	38	44	anti-parallel
Strand 3	L	94	99	anti-parallel
Strand 4	L	86	91	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	126	130	parallel
Strand 3	L	108	114	anti-parallel
Strand 4	L	57	62	anti-parallel
Strand 5	L	69	73	anti-parallel
Strand 6	L	77	78	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	32	first strand
Strand 2	L	126	130	parallel
Strand 3	L	108	114	anti-parallel
Strand 4	L	121	122	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	26	first strand
Strand 2	G	38	44	anti-parallel
Strand 3	G	94	99	anti-parallel
Strand 4	G	86	91	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	126	130	parallel
Strand 3	G	108	114	anti-parallel
Strand 4	G	57	62	anti-parallel
Strand 5	G	69	73	anti-parallel
Strand 6	G	77	78	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	126	130	parallel
Strand 3	G	108	114	anti-parallel
Strand 4	G	121	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RGZ