Analysis of interatomic Contacts of Structural Units in PDB entry:
8RI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RI0 entry

There are 2 chains in PDB entry 8RI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 247GLU 430
B
 TYR 247PHE 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8RI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
271 285Right-handed alpha
Helix 2
AA2
A
296 311Right-handed alpha
Helix 3
AA3
A
324 327Right-handed 310
Helix 4
AA4
A
334 347Right-handed alpha
Helix 5
AA5
A
365 373Right-handed alpha
Helix 6
AA6
A
388 395Right-handed alpha
Helix 7
AA7
A
412 428Right-handed alpha
Helix 8
AA8
B
271 285Right-handed alpha
Helix 9
AA9
B
296 311Right-handed alpha
Helix 10
AB1
B
334 347Right-handed alpha
Helix 11
AB2
B
365 373Right-handed alpha
Helix 12
AB3
B
388 395Right-handed alpha
Helix 13
AB4
B
412 428Right-handed alpha
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There are 4 sheets in PDB entry 8RI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
289 293parallel
Strand 3
A
249 254parallel
Strand 4
A
377 381parallel
Strand 5
A
351 354parallel
Strand 6
A
397 398parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
265 266anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 332first strand
Strand 2
B
290 293parallel
Strand 3
B
249 254parallel
Strand 4
B
377 381parallel
Strand 5
B
351 354parallel
Strand 6
B
397 398parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il