Analysis of interatomic Contacts of Structural Units in PDB entry:
8RI1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RI1 entry

There are 2 chains in PDB entry 8RI1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9LEU 578
B
 LYS 9LEU 578
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8RI1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
25 61Right-handed alpha
Helix 3
AA3
A
64 108Right-handed alpha
Helix 4
AA4
A
111 118Right-handed alpha
Helix 5
AA5
A
119 163Right-handed alpha
Helix 6
AA6
A
164 210Right-handed alpha
Helix 7
AA7
A
212 220Right-handed alpha
Helix 8
AA8
A
221 272Right-handed alpha
Helix 9
AA9
A
279 314Right-handed alpha
Helix 10
AB1
A
314 321Right-handed alpha
Helix 11
AB2
A
379 388Right-handed alpha
Helix 12
AB3
A
404 408Right-handed 310
Helix 13
AB4
A
409 416Right-handed alpha
Helix 14
AB5
A
430 438Right-handed alpha
Helix 15
AB6
A
445 454Right-handed alpha
Helix 16
AB7
A
457 464Right-handed alpha
Helix 17
AB8
A
473 477Right-handed 310
Helix 18
AB9
A
482 495Right-handed alpha
Helix 19
AC1
A
510 528Right-handed alpha
Helix 20
AC2
A
536 540Right-handed 310
Helix 21
AC3
A
559 567Right-handed alpha
Helix 22
AC4
A
568 570Right-handed 310
Helix 23
AC5
A
571 578Right-handed alpha
Helix 24
AC6
B
11 22Right-handed alpha
Helix 25
AC7
B
25 49Right-handed alpha
Helix 26
AC8
B
49 63Right-handed alpha
Helix 27
AC9
B
66 109Right-handed alpha
Helix 28
AD1
B
111 118Right-handed alpha
Helix 29
AD2
B
120 163Right-handed alpha
Helix 30
AD3
B
166 210Right-handed alpha
Helix 31
AD4
B
213 219Right-handed alpha
Helix 32
AD5
B
221 273Right-handed alpha
Helix 33
AD6
B
279 321Right-handed alpha
Helix 34
AD7
B
379 388Right-handed alpha
Helix 35
AD8
B
404 408Right-handed 310
Helix 36
AD9
B
409 414Right-handed alpha
Helix 37
AE1
B
430 437Right-handed alpha
Helix 38
AE2
B
445 455Right-handed alpha
Helix 39
AE3
B
457 462Right-handed alpha
Helix 40
AE4
B
480 496Right-handed alpha
Helix 41
AE5
B
510 526Right-handed alpha
Helix 42
AE6
B
559 568Right-handed alpha
Helix 43
AE7
B
568 578Right-handed alpha
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There are 4 sheets in PDB entry 8RI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
398 399anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
499 502parallel
Strand 3
A
529 533parallel
Strand 4
A
369 373parallel
Strand 5
A
547 550parallel
Strand 6
A
553 557anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 364first strand
Strand 2
B
341 348anti-parallel
Strand 3
B
398 399anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 420first strand
Strand 2
B
499 503parallel
Strand 3
B
530 533parallel
Strand 4
B
369 372parallel
Strand 5
B
545 546parallel
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