Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RIA entry

There are 2 chains in PDB entry 8RIA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10MET 580
B
 SER 10MET 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8RIA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
25 55Right-handed alpha
Helix 3
AA3
A
59 110Right-handed alpha
Helix 4
AA4
A
112 119Right-handed alpha
Helix 5
AA5
A
120 163Right-handed alpha
Helix 6
AA6
A
166 210Right-handed alpha
Helix 7
AA7
A
211 220Right-handed alpha
Helix 8
AA8
A
221 276Right-handed alpha
Helix 9
AA9
A
281 323Right-handed alpha
Helix 10
AB1
A
380 388Right-handed alpha
Helix 11
AB2
A
409 417Right-handed alpha
Helix 12
AB3
A
430 438Right-handed alpha
Helix 13
AB4
A
447 455Right-handed alpha
Helix 14
AB5
A
458 464Right-handed alpha
Helix 15
AB6
A
480 496Right-handed alpha
Helix 16
AB7
A
511 525Right-handed alpha
Helix 17
AB8
A
537 542Right-handed alpha
Helix 18
AB9
A
560 567Right-handed alpha
Helix 19
AC1
A
571 580Right-handed alpha
Helix 20
AC2
B
11 22Right-handed alpha
Helix 21
AC3
B
25 57Right-handed alpha
Helix 22
AC4
B
60 110Right-handed alpha
Helix 23
AC5
B
112 117Right-handed alpha
Helix 24
AC6
B
120 163Right-handed alpha
Helix 25
AC7
B
168 210Right-handed alpha
Helix 26
AC8
B
212 219Right-handed alpha
Helix 27
AC9
B
221 275Right-handed alpha
Helix 28
AD1
B
279 295Right-handed alpha
Helix 29
AD2
B
296 323Right-handed alpha
Helix 30
AD3
B
379 388Right-handed alpha
Helix 31
AD4
B
409 416Right-handed alpha
Helix 32
AD5
B
431 438Right-handed alpha
Helix 33
AD6
B
447 455Right-handed alpha
Helix 34
AD7
B
456 461Right-handed alpha
Helix 35
AD8
B
480 496Right-handed alpha
Helix 36
AD9
B
512 524Right-handed alpha
Helix 37
AE1
B
536 543Right-handed alpha
Helix 38
AE2
B
562 571Right-handed alpha
Helix 39
AE3
B
571 580Right-handed alpha
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There are 6 sheets in PDB entry 8RIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
397 399anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
545 549parallel
Strand 3
A
554 555anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 502first strand
Strand 2
A
529 532parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 364first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
397 399anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 502first strand
Strand 2
B
529 533parallel
Strand 3
B
369 373parallel
Strand 4
B
545 550parallel
Strand 5
B
553 556anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 430first strand
Strand 2
B
471 473anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il