Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RIH entry

There are 2 chains in PDB entry 8RIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLY 340
B
 SER 4GLY 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8RIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
44 60Right-handed alpha
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
109 121Right-handed alpha
Helix 5
AA5
A
133 143Right-handed alpha
Helix 6
AA6
A
144 150Right-handed 310
Helix 7
AA7
A
159 163Right-handed 310
Helix 8
AA8
A
173 178Right-handed alpha
Helix 9
AA9
A
179 189Right-handed alpha
Helix 10
AB1
A
192 194Right-handed 310
Helix 11
AB2
A
200 205Right-handed alpha
Helix 12
AB3
A
210 218Right-handed alpha
Helix 13
AB4
A
224 240Right-handed alpha
Helix 14
AB5
A
254 258Right-handed 310
Helix 15
AB6
A
259 266Right-handed alpha
Helix 16
AB7
A
270 275Right-handed alpha
Helix 17
AB8
A
318 334Right-handed alpha
Helix 18
AB9
A
335 337Right-handed 310
Helix 19
AC1
B
15 28Right-handed alpha
Helix 20
AC2
B
44 60Right-handed alpha
Helix 21
AC3
B
82 87Right-handed alpha
Helix 22
AC4
B
109 121Right-handed alpha
Helix 23
AC5
B
133 143Right-handed alpha
Helix 24
AC6
B
144 150Right-handed 310
Helix 25
AC7
B
159 163Right-handed 310
Helix 26
AC8
B
173 178Right-handed alpha
Helix 27
AC9
B
179 188Right-handed alpha
Helix 28
AD1
B
189 194Right-handed alpha
Helix 29
AD2
B
200 205Right-handed alpha
Helix 30
AD3
B
210 218Right-handed alpha
Helix 31
AD4
B
224 240Right-handed alpha
Helix 32
AD5
B
254 258Right-handed 310
Helix 33
AD6
B
259 266Right-handed alpha
Helix 34
AD7
B
270 275Right-handed alpha
Helix 35
AD8
B
318 334Right-handed alpha
Helix 36
AD9
B
335 337Right-handed 310
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There are 2 sheets in PDB entry 8RIH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
31 38parallel
Strand 3
A
6 12parallel
Strand 4
A
126 129parallel
Strand 5
A
152 156parallel
Strand 6
A
196 199parallel
Strand 7
A
311 316parallel
Strand 8
A
277 285anti-parallel
Strand 9
A
297 303anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
31 38parallel
Strand 3
B
6 12parallel
Strand 4
B
126 129parallel
Strand 5
B
152 156parallel
Strand 6
B
196 199parallel
Strand 7
B
311 316parallel
Strand 8
B
277 285anti-parallel
Strand 9
B
297 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il