Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RIN entry

There are 2 chains in PDB entry 8RIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 124ALA 417
B
 SER 124ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8RIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 133Right-handed alpha
Helix 2
AA2
A
135 139Right-handed 310
Helix 3
AA3
A
199 203Right-handed 310
Helix 4
AA4
A
226 245Right-handed alpha
Helix 5
AA5
A
258 272Right-handed 310
Helix 6
AA6
A
289 297Right-handed alpha
Helix 7
AA7
A
297 302Right-handed alpha
Helix 8
AA8
A
331 337Right-handed 310
Helix 9
AA9
A
354 359Right-handed alpha
Helix 10
AB1
A
360 362Right-handed 310
Helix 11
AB2
A
400 417Right-handed alpha
Helix 12
AB3
B
128 132Right-handed 310
Helix 13
AB4
B
135 139Right-handed 310
Helix 14
AB5
B
226 245Right-handed alpha
Helix 15
AB6
B
258 272Right-handed 310
Helix 16
AB7
B
289 297Right-handed alpha
Helix 17
AB8
B
297 302Right-handed alpha
Helix 18
AB9
B
331 335Right-handed 310
Helix 19
AC1
B
354 359Right-handed alpha
Helix 20
AC2
B
360 362Right-handed 310
Helix 21
AC3
B
400 417Right-handed alpha
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There are 2 sheets in PDB entry 8RIN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
162 166anti-parallel
Strand 3
A
391 396anti-parallel
Strand 4
A
372 375anti-parallel
Strand 5
A
364 367anti-parallel
Strand 6
A
220 224parallel
Strand 7
A
346 350parallel
Strand 8
A
322 328parallel
Strand 9
A
250 256parallel
Strand 10
A
286 287parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
162 166anti-parallel
Strand 3
B
391 396anti-parallel
Strand 4
B
372 375anti-parallel
Strand 5
B
364 367anti-parallel
Strand 6
B
220 224parallel
Strand 7
B
346 350parallel
Strand 8
B
322 328parallel
Strand 9
B
250 256parallel
Strand 10
B
286 287parallel
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