Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RIP entry

There are 4 chains in PDB entry 8RIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 0	PHE 310
B	MET 1	PHE 310
C	LEU 3	PHE 310
D	LEU 3	PHE 310

There are 56 helices in PDB entry 8RIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	23	Right-handed 310
Helix 2	AA2	A	29	44	Right-handed alpha
Helix 3	AA3	A	63	78	Right-handed alpha
Helix 4	AA4	A	93	98	Right-handed alpha
Helix 5	AA5	A	98	105	Right-handed alpha
Helix 6	AA6	A	120	122	Right-handed 310
Helix 7	AA7	A	123	128	Right-handed alpha
Helix 8	AA8	A	129	131	Right-handed 310
Helix 9	AA9	A	133	141	Right-handed alpha
Helix 10	AB1	A	150	163	Right-handed alpha
Helix 11	AB2	A	174	187	Right-handed alpha
Helix 12	AB3	A	209	225	Right-handed alpha
Helix 13	AB4	A	238	249	Right-handed alpha
Helix 14	AB5	A	271	286	Right-handed alpha
Helix 15	AB6	A	292	301	Right-handed alpha
Helix 16	AB7	B	19	23	Right-handed 310
Helix 17	AB8	B	29	44	Right-handed alpha
Helix 18	AB9	B	63	78	Right-handed alpha
Helix 19	AC1	B	93	98	Right-handed alpha
Helix 20	AC2	B	98	105	Right-handed alpha
Helix 21	AC3	B	121	128	Right-handed alpha
Helix 22	AC4	B	129	131	Right-handed 310
Helix 23	AC5	B	133	141	Right-handed alpha
Helix 24	AC6	B	150	163	Right-handed alpha
Helix 25	AC7	B	174	187	Right-handed alpha
Helix 26	AC8	B	209	225	Right-handed alpha
Helix 27	AC9	B	238	249	Right-handed alpha
Helix 28	AD1	B	271	286	Right-handed alpha
Helix 29	AD2	B	292	301	Right-handed alpha
Helix 30	AD3	C	19	23	Right-handed 310
Helix 31	AD4	C	29	44	Right-handed alpha
Helix 32	AD5	C	63	78	Right-handed alpha
Helix 33	AD6	C	93	105	Right-handed alpha
Helix 34	AD7	C	122	128	Right-handed alpha
Helix 35	AD8	C	129	131	Right-handed 310
Helix 36	AD9	C	133	141	Right-handed alpha
Helix 37	AE1	C	150	163	Right-handed alpha
Helix 38	AE2	C	174	188	Right-handed alpha
Helix 39	AE3	C	209	225	Right-handed alpha
Helix 40	AE4	C	238	249	Right-handed alpha
Helix 41	AE5	C	271	286	Right-handed alpha
Helix 42	AE6	C	292	301	Right-handed alpha
Helix 43	AE7	D	19	23	Right-handed 310
Helix 44	AE8	D	29	44	Right-handed alpha
Helix 45	AE9	D	63	78	Right-handed alpha
Helix 46	AF1	D	93	98	Right-handed alpha
Helix 47	AF2	D	98	105	Right-handed alpha
Helix 48	AF3	D	122	128	Right-handed alpha
Helix 49	AF4	D	129	131	Right-handed 310
Helix 50	AF5	D	133	141	Right-handed alpha
Helix 51	AF6	D	150	163	Right-handed alpha
Helix 52	AF7	D	174	187	Right-handed alpha
Helix 53	AF8	D	209	225	Right-handed alpha
Helix 54	AF9	D	238	249	Right-handed alpha
Helix 55	AG1	D	271	286	Right-handed alpha
Helix 56	AG2	D	292	301	Right-handed alpha

There are 18 sheets in PDB entry 8RIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	289	290	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	47	50	parallel
Strand 3	A	81	84	parallel
Strand 4	A	108	112	parallel
Strand 5	A	167	172	parallel
Strand 6	A	194	200	parallel
Strand 7	A	228	234	parallel
Strand 8	A	252	255	parallel
Strand 9	A	9	12	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	60	61	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	146	147	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	289	290	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	47	50	parallel
Strand 3	B	81	84	parallel
Strand 4	B	108	112	parallel
Strand 5	B	167	172	parallel
Strand 6	B	194	200	parallel
Strand 7	B	228	234	parallel
Strand 8	B	252	255	parallel
Strand 9	B	9	12	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	146	147	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	267	268	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	289	290	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	47	50	parallel
Strand 3	C	81	84	parallel
Strand 4	C	108	112	parallel
Strand 5	C	167	172	parallel
Strand 6	C	194	200	parallel
Strand 7	C	228	234	parallel
Strand 8	C	252	255	parallel
Strand 9	C	9	12	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	60	61	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	146	147	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	267	268	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	289	290	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	47	50	parallel
Strand 3	D	81	84	parallel
Strand 4	D	108	112	parallel
Strand 5	D	167	172	parallel
Strand 6	D	194	200	parallel
Strand 7	D	228	234	parallel
Strand 8	D	252	255	parallel
Strand 9	D	9	12	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	146	147	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	267	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIP