Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RIU entry

There are 3 chains in PDB entry 8RIU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 31	ARG 789
B	MET 1	GLY 370
C	MET 1	ARG 169

There are124 helices in PDB entry 8RIU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	56	Right-handed alpha
Helix 2	AA2	A	79	82	Right-handed 310
Helix 3	AA3	A	89	124	Right-handed alpha
Helix 4	AA4	A	139	147	Right-handed alpha
Helix 5	AA5	A	152	155	Right-handed 310
Helix 6	AA6	A	156	174	Right-handed alpha
Helix 7	AA7	A	181	212	Right-handed alpha
Helix 8	AA8	A	244	257	Right-handed alpha
Helix 9	AA9	A	269	279	Right-handed alpha
Helix 10	AB1	A	287	289	Right-handed 310
Helix 11	AB2	A	290	298	Right-handed alpha
Helix 12	AB3	A	313	321	Right-handed alpha
Helix 13	AB4	A	343	354	Right-handed alpha
Helix 14	AB5	A	363	382	Right-handed alpha
Helix 15	AB6	A	390	401	Right-handed alpha
Helix 16	AB7	A	407	412	Right-handed alpha
Helix 17	AB8	A	417	427	Right-handed alpha
Helix 18	AB9	A	430	440	Right-handed alpha
Helix 19	AC1	A	444	449	Right-handed alpha
Helix 20	AC2	A	455	470	Right-handed alpha
Helix 21	AC3	A	483	497	Right-handed alpha
Helix 22	AC4	A	515	528	Right-handed alpha
Helix 23	AC5	A	536	543	Right-handed alpha
Helix 24	AC6	A	552	557	Right-handed alpha
Helix 25	AC7	A	571	574	Right-handed 310
Helix 26	AC8	A	575	589	Right-handed alpha
Helix 27	AC9	A	597	609	Right-handed alpha
Helix 28	AD1	A	620	633	Right-handed alpha
Helix 29	AD2	A	641	646	Right-handed 310
Helix 30	AD3	A	656	659	Right-handed 310
Helix 31	AD4	A	686	697	Right-handed alpha
Helix 32	AD5	A	704	724	Right-handed alpha
Helix 33	AD6	A	729	734	Right-handed 310
Helix 34	AD7	A	736	740	Right-handed 310
Helix 35	AD8	A	744	755	Right-handed alpha
Helix 36	AD9	A	784	788	Right-handed 310
Helix 37	AE1	B	8	16	Right-handed alpha
Helix 38	AE2	B	26	31	Right-handed alpha
Helix 39	AE3	B	54	60	Right-handed alpha
Helix 40	AE4	B	66	76	Right-handed alpha
Helix 41	AE5	B	97	104	Right-handed alpha
Helix 42	AE6	B	108	120	Right-handed alpha
Helix 43	AE7	B	146	153	Right-handed alpha
Helix 44	AE8	B	163	173	Right-handed alpha
Helix 45	AE9	B	183	196	Right-handed alpha
Helix 46	AF1	B	202	204	Right-handed 310
Helix 47	AF2	B	219	230	Right-handed alpha
Helix 48	AF3	B	233	237	Right-handed 310
Helix 49	AF4	B	259	267	Right-handed 310
Helix 50	AF5	B	268	274	Right-handed 310
Helix 51	AF6	B	302	315	Right-handed alpha
Helix 52	AF7	B	324	350	Right-handed alpha
Helix 53	AF8	B	361	363	Right-handed 310
Helix 54	AF9	B	364	370	Right-handed alpha
Helix 55	AG1	C	20	31	Right-handed alpha
Helix 56	AG2	C	40	44	Right-handed 310
Helix 57	AG3	C	47	56	Right-handed alpha
Helix 58	AG4	C	67	75	Right-handed alpha
Helix 59	AG5	C	84	93	Right-handed alpha
Helix 60	AG6	C	115	130	Right-handed alpha
Helix 61	AG7	C	156	158	Right-handed 310
Helix 62	AG8	C	159	173	Right-handed alpha
Helix 63	AG9	D	46	56	Right-handed alpha
Helix 64	AH1	D	89	124	Right-handed alpha
Helix 65	AH2	D	139	147	Right-handed alpha
Helix 66	AH3	D	152	155	Right-handed 310
Helix 67	AH4	D	156	173	Right-handed alpha
Helix 68	AH5	D	181	212	Right-handed alpha
Helix 69	AH6	D	244	257	Right-handed alpha
Helix 70	AH7	D	269	279	Right-handed alpha
Helix 71	AH8	D	287	289	Right-handed 310
Helix 72	AH9	D	290	298	Right-handed alpha
Helix 73	AI1	D	313	321	Right-handed alpha
Helix 74	AI2	D	343	353	Right-handed alpha
Helix 75	AI3	D	363	383	Right-handed alpha
Helix 76	AI4	D	390	401	Right-handed alpha
Helix 77	AI5	D	407	412	Right-handed alpha
Helix 78	AI6	D	417	427	Right-handed alpha
Helix 79	AI7	D	430	440	Right-handed alpha
Helix 80	AI8	D	445	450	Right-handed 310
Helix 81	AI9	D	455	464	Right-handed alpha
Helix 82	AJ1	D	464	470	Right-handed alpha
Helix 83	AJ2	D	483	497	Right-handed alpha
Helix 84	AJ3	D	515	528	Right-handed alpha
Helix 85	AJ4	D	536	543	Right-handed alpha
Helix 86	AJ5	D	552	557	Right-handed alpha
Helix 87	AJ6	D	571	574	Right-handed 310
Helix 88	AJ7	D	575	589	Right-handed alpha
Helix 89	AJ8	D	597	609	Right-handed alpha
Helix 90	AJ9	D	620	633	Right-handed alpha
Helix 91	AK1	D	641	646	Right-handed 310
Helix 92	AK2	D	656	659	Right-handed 310
Helix 93	AK3	D	686	697	Right-handed alpha
Helix 94	AK4	D	704	724	Right-handed alpha
Helix 95	AK5	D	729	734	Right-handed 310
Helix 96	AK6	D	736	740	Right-handed 310
Helix 97	AK7	D	744	757	Right-handed alpha
Helix 98	AK8	D	784	788	Right-handed 310
Helix 99	AK9	E	8	16	Right-handed alpha
Helix 100	AL1	E	26	31	Right-handed alpha
Helix 101	AL2	E	54	60	Right-handed alpha
Helix 102	AL3	E	66	76	Right-handed alpha
Helix 103	AL4	E	97	104	Right-handed alpha
Helix 104	AL5	E	108	120	Right-handed alpha
Helix 105	AL6	E	146	153	Right-handed alpha
Helix 106	AL7	E	163	173	Right-handed alpha
Helix 107	AL8	E	183	196	Right-handed alpha
Helix 108	AL9	E	202	204	Right-handed 310
Helix 109	AM1	E	219	230	Right-handed alpha
Helix 110	AM2	E	233	237	Right-handed 310
Helix 111	AM3	E	261	267	Right-handed 310
Helix 112	AM4	E	268	274	Right-handed 310
Helix 113	AM5	E	302	315	Right-handed alpha
Helix 114	AM6	E	324	350	Right-handed alpha
Helix 115	AM7	E	361	363	Right-handed 310
Helix 116	AM8	E	364	370	Right-handed alpha
Helix 117	AM9	F	20	31	Right-handed alpha
Helix 118	AN1	F	40	44	Right-handed 310
Helix 119	AN2	F	47	56	Right-handed alpha
Helix 120	AN3	F	67	75	Right-handed alpha
Helix 121	AN4	F	84	93	Right-handed alpha
Helix 122	AN5	F	115	130	Right-handed alpha
Helix 123	AN6	F	156	158	Right-handed 310
Helix 124	AN7	F	159	174	Right-handed alpha

There are 25 sheets in PDB entry 8RIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	648	652	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	A	473	476	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	264	268	parallel
Strand 3	A	236	240	parallel
Strand 4	A	302	305	parallel
Strand 5	A	325	327	parallel
Strand 6	A	358	360	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	570	first strand
Strand 2	A	531	535	parallel
Strand 3	A	502	505	parallel
Strand 4	A	611	615	parallel
Strand 5	A	637	639	parallel
Strand 6	A	681	683	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	672	first strand
Strand 2	A	661	664	anti-parallel
Strand 3	A	781	782	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	759	761	first strand
Strand 2	A	766	769	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	42	45	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	144	first strand
Strand 2	B	125	131	anti-parallel
Strand 3	B	178	182	parallel
Strand 4	B	206	212	parallel
Strand 5	B	284	287	parallel
Strand 6	B	296	300	anti-parallel
Strand 7	B	89	95	anti-parallel
Strand 8	B	318	321	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	254	256	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	150	151	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	61	63	parallel
Strand 3	C	34	38	parallel
Strand 4	C	108	112	parallel
Strand 5	C	136	139	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	61	first strand
Strand 2	D	648	652	anti-parallel
Strand 3	D	679	683	anti-parallel
Strand 4	D	637	639	parallel
Strand 5	D	611	615	parallel
Strand 6	D	502	505	parallel
Strand 7	D	531	535	parallel
Strand 8	D	566	570	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	225	first strand
Strand 2	D	473	476	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	264	268	parallel
Strand 3	D	236	240	parallel
Strand 4	D	302	305	parallel
Strand 5	D	325	327	parallel
Strand 6	D	358	360	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	672	first strand
Strand 2	D	661	664	anti-parallel
Strand 3	D	781	782	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	759	761	first strand
Strand 2	D	766	769	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	39	first strand
Strand 2	E	42	45	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	144	first strand
Strand 2	E	125	131	anti-parallel
Strand 3	E	178	182	parallel
Strand 4	E	206	212	parallel
Strand 5	E	284	287	parallel
Strand 6	E	296	300	anti-parallel
Strand 7	E	89	95	anti-parallel
Strand 8	E	318	322	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	243	first strand
Strand 2	E	246	251	anti-parallel
Strand 3	E	254	259	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	355	first strand
Strand 2	E	358	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	F	150	151	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	82	first strand
Strand 2	F	61	63	parallel
Strand 3	F	34	38	parallel
Strand 4	F	108	112	parallel
Strand 5	F	136	139	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RIU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIU