Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8RIZ entry

There are 5 chains in PDB entry 8RIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLN 436
A	MET 1	VAL 437
K	ASN 8	LYS 323
L	GLU 6	GLU 334
T	ILE 920	ILE 924

There are 55 helices in PDB entry 8RIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	29	Right-handed alpha
Helix 2	AA2	B	40	48	Right-handed alpha
Helix 3	AA3	B	49	51	Right-handed 310
Helix 4	AA4	B	71	80	Right-handed alpha
Helix 5	AA5	B	88	90	Right-handed 310
Helix 6	AA6	B	102	109	Right-handed alpha
Helix 7	AA7	B	114	127	Right-handed alpha
Helix 8	AA8	B	144	161	Right-handed alpha
Helix 9	AA9	B	182	195	Right-handed alpha
Helix 10	AB1	B	206	216	Right-handed alpha
Helix 11	AB2	B	223	239	Right-handed alpha
Helix 12	AB3	B	240	243	Right-handed 310
Helix 13	AB4	B	251	260	Right-handed alpha
Helix 14	AB5	B	280	284	Right-handed 310
Helix 15	AB6	B	287	296	Right-handed alpha
Helix 16	AB7	B	324	339	Right-handed alpha
Helix 17	AB8	B	340	343	Right-handed 310
Helix 18	AB9	B	384	400	Right-handed alpha
Helix 19	AC1	B	414	435	Right-handed alpha
Helix 20	AC2	A	10	28	Right-handed alpha
Helix 21	AC3	A	71	81	Right-handed alpha
Helix 22	AC4	A	102	108	Right-handed alpha
Helix 23	AC5	A	114	128	Right-handed alpha
Helix 24	AC6	A	143	161	Right-handed alpha
Helix 25	AC7	A	182	194	Right-handed alpha
Helix 26	AC8	A	205	216	Right-handed alpha
Helix 27	AC9	A	223	244	Right-handed alpha
Helix 28	AD1	A	251	260	Right-handed alpha
Helix 29	AD2	A	287	296	Right-handed alpha
Helix 30	AD3	A	306	310	Right-handed 310
Helix 31	AD4	A	324	337	Right-handed alpha
Helix 32	AD5	A	384	401	Right-handed alpha
Helix 33	AD6	A	404	410	Right-handed alpha
Helix 34	AD7	A	415	437	Right-handed alpha
Helix 35	AD8	K	19	24	Right-handed alpha
Helix 36	AD9	K	57	66	Right-handed alpha
Helix 37	AE1	K	66	74	Right-handed alpha
Helix 38	AE2	K	90	96	Right-handed alpha
Helix 39	AE3	K	107	118	Right-handed alpha
Helix 40	AE4	K	119	122	Right-handed 310
Helix 41	AE5	K	175	188	Right-handed alpha
Helix 42	AE6	K	237	241	Right-handed 310
Helix 43	AE7	K	245	271	Right-handed alpha
Helix 44	AE8	K	280	286	Right-handed alpha
Helix 45	AE9	K	305	307	Right-handed 310
Helix 46	AF1	K	308	323	Right-handed alpha
Helix 47	AF2	L	19	26	Right-handed alpha
Helix 48	AF3	L	57	76	Right-handed alpha
Helix 49	AF4	L	90	96	Right-handed alpha
Helix 50	AF5	L	106	123	Right-handed alpha
Helix 51	AF6	L	175	191	Right-handed alpha
Helix 52	AF7	L	196	203	Right-handed alpha
Helix 53	AF8	L	256	271	Right-handed alpha
Helix 54	AF9	L	280	290	Right-handed alpha
Helix 55	AG1	L	308	323	Right-handed alpha

There are 16 sheets in PDB entry 8RIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel
Strand 7	B	267	268	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	312	321	anti-parallel
Strand 4	B	351	356	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	3	9	parallel
Strand 4	A	132	138	parallel
Strand 5	A	165	171	parallel
Strand 6	A	200	204	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	320	321	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	318	anti-parallel
Strand 4	A	351	354	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	51	first strand
Strand 2	K	9	14	parallel
Strand 3	K	295	301	parallel
Strand 4	K	78	84	parallel
Strand 5	K	222	231	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	141	144	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	51	first strand
Strand 2	K	9	14	parallel
Strand 3	K	295	301	parallel
Strand 4	K	78	84	parallel
Strand 5	K	222	231	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	171	172	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	34	first strand
Strand 2	K	38	40	anti-parallel
Strand 3	K	45	47	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	157	first strand
Strand 2	K	163	165	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	192	193	first strand
Strand 2	K	201	202	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	50	52	first strand
Strand 2	L	10	15	parallel
Strand 3	L	297	302	parallel
Strand 4	L	79	84	parallel
Strand 5	L	222	231	parallel
Strand 6	L	204	216	anti-parallel
Strand 7	L	126	138	anti-parallel
Strand 8	L	142	144	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	50	52	first strand
Strand 2	L	10	15	parallel
Strand 3	L	297	302	parallel
Strand 4	L	79	84	parallel
Strand 5	L	222	231	parallel
Strand 6	L	204	216	anti-parallel
Strand 7	L	126	138	anti-parallel
Strand 8	L	171	172	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	33	first strand
Strand 2	L	38	41	anti-parallel
Strand 3	L	44	47	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	164	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8RIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8RIZ