Analysis of interatomic Contacts of Structural Units in PDB entry:
8RJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8RJ1 entry

There are 2 chains in PDB entry 8RJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 5GLY 466
B
 TYR 5HIS 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8RJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 34Right-handed alpha
Helix 2
AA2
A
42 63Right-handed alpha
Helix 3
AA3
A
67 84Right-handed alpha
Helix 4
AA4
A
85 90Right-handed 310
Helix 5
AA5
A
97 99Right-handed 310
Helix 6
AA6
A
100 119Right-handed alpha
Helix 7
AA7
A
140 178Right-handed alpha
Helix 8
AA8
A
197 219Right-handed alpha
Helix 9
AA9
A
220 222Right-handed 310
Helix 10
AB1
A
239 255Right-handed alpha
Helix 11
AB2
A
263 270Right-handed alpha
Helix 12
AB3
A
271 299Right-handed alpha
Helix 13
AB4
A
327 353Right-handed alpha
Helix 14
AB5
A
361 387Right-handed alpha
Helix 15
AB6
A
388 391Right-handed 310
Helix 16
AB7
A
394 404Right-handed alpha
Helix 17
AB8
A
405 411Right-handed 310
Helix 18
AB9
A
412 417Right-handed alpha
Helix 19
AC1
A
417 432Right-handed alpha
Helix 20
AC2
A
434 442Right-handed alpha
Helix 21
AC3
A
446 454Right-handed alpha
Helix 22
AC4
A
457 461Right-handed 310
Helix 23
AC5
B
24 34Right-handed alpha
Helix 24
AC6
B
42 63Right-handed alpha
Helix 25
AC7
B
67 84Right-handed alpha
Helix 26
AC8
B
86 90Right-handed 310
Helix 27
AC9
B
97 99Right-handed 310
Helix 28
AD1
B
100 119Right-handed alpha
Helix 29
AD2
B
140 178Right-handed alpha
Helix 30
AD3
B
197 219Right-handed alpha
Helix 31
AD4
B
220 222Right-handed 310
Helix 32
AD5
B
239 255Right-handed alpha
Helix 33
AD6
B
263 270Right-handed alpha
Helix 34
AD7
B
271 299Right-handed alpha
Helix 35
AD8
B
327 353Right-handed alpha
Helix 36
AD9
B
361 387Right-handed alpha
Helix 37
AE1
B
388 391Right-handed 310
Helix 38
AE2
B
394 404Right-handed alpha
Helix 39
AE3
B
405 411Right-handed 310
Helix 40
AE4
B
412 417Right-handed alpha
Helix 41
AE5
B
417 432Right-handed alpha
Helix 42
AE6
B
434 442Right-handed alpha
Helix 43
AE7
B
446 454Right-handed alpha
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There are 8 sheets in PDB entry 8RJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
13 17anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 187first strand
Strand 2
A
190 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
259 260parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
14 17anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 187first strand
Strand 2
B
190 196anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
259 260parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
392 393anti-parallel
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